Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2914

Experiment: Cholin acetate 30 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2913 and Shewana3_2914 are separated by 1 nucleotidesShewana3_2914 and Shewana3_2915 are separated by 197 nucleotides Shewana3_2913: Shewana3_2913 - hypothetical protein (RefSeq), at 3,488,666 to 3,489,565 _2913 Shewana3_2914: Shewana3_2914 - Ion transport 2 domain-containing protein (RefSeq), at 3,489,567 to 3,489,977 _2914 Shewana3_2915: Shewana3_2915 - phage integrase family protein (RefSeq), at 3,490,175 to 3,491,653 _2915 Position (kb) 3489 3490Strain fitness (log2 ratio) -1 0 1 2at 3488.581 kb on + strandat 3488.623 kb on - strandat 3488.640 kb on - strandat 3488.665 kb on - strandat 3488.895 kb on + strand, within Shewana3_2913at 3488.996 kb on + strand, within Shewana3_2913at 3489.133 kb on + strand, within Shewana3_2913at 3489.350 kb on + strand, within Shewana3_2913at 3489.371 kb on + strand, within Shewana3_2913at 3489.732 kb on - strand, within Shewana3_2914at 3489.734 kb on + strand, within Shewana3_2914at 3490.003 kb on + strandat 3490.011 kb on - strandat 3490.011 kb on - strandat 3490.045 kb on - strandat 3490.728 kb on + strand, within Shewana3_2915at 3490.881 kb on + strand, within Shewana3_2915at 3490.904 kb on + strand, within Shewana3_2915

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Per-strain Table

Position Strand Gene LocusTag Fraction Cholin acetate 30 mM
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3,488,581 + +0.5
3,488,623 - +1.0
3,488,640 - -0.0
3,488,665 - -0.4
3,488,895 + Shewana3_2913 0.25 +0.4
3,488,996 + Shewana3_2913 0.37 +2.5
3,489,133 + Shewana3_2913 0.52 +0.2
3,489,350 + Shewana3_2913 0.76 -0.0
3,489,371 + Shewana3_2913 0.78 -0.0
3,489,732 - Shewana3_2914 0.40 -1.5
3,489,734 + Shewana3_2914 0.41 +1.0
3,490,003 + -1.2
3,490,011 - +0.4
3,490,011 - +1.8
3,490,045 - +1.5
3,490,728 + Shewana3_2915 0.37 +0.1
3,490,881 + Shewana3_2915 0.48 -0.2
3,490,904 + Shewana3_2915 0.49 -0.0

Or see this region's nucleotide sequence