Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2846

Experiment: Cholin acetate 30 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2845 and Shewana3_2846 are separated by 608 nucleotidesShewana3_2846 and Shewana3_2847 are separated by 177 nucleotidesShewana3_2847 and Shewana3_2848 are separated by 154 nucleotides Shewana3_2845: Shewana3_2845 - hypothetical protein (RefSeq), at 3,405,443 to 3,405,871 _2845 Shewana3_2846: Shewana3_2846 - IS4 family transposase (RefSeq), at 3,406,480 to 3,408,093 _2846 Shewana3_2847: Shewana3_2847 - hypothetical protein (RefSeq), at 3,408,271 to 3,408,465 _2847 Shewana3_2848: Shewana3_2848 - hypothetical protein (RefSeq), at 3,408,620 to 3,410,317 _2848 Position (kb) 3406 3407 3408 3409Strain fitness (log2 ratio) -2 -1 0 1 2at 3405.522 kb on + strand, within Shewana3_2845at 3405.830 kb on - strandat 3405.879 kb on + strandat 3405.887 kb on - strandat 3406.231 kb on + strandat 3406.240 kb on - strandat 3406.308 kb on - strandat 3406.308 kb on - strandat 3408.221 kb on + strandat 3408.227 kb on + strandat 3408.235 kb on - strandat 3408.320 kb on + strand, within Shewana3_2847at 3408.320 kb on + strand, within Shewana3_2847at 3408.328 kb on - strand, within Shewana3_2847at 3408.328 kb on - strand, within Shewana3_2847at 3408.345 kb on + strand, within Shewana3_2847at 3408.481 kb on + strandat 3408.538 kb on + strandat 3408.655 kb on + strandat 3409.025 kb on - strand, within Shewana3_2848at 3409.062 kb on + strand, within Shewana3_2848

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Per-strain Table

Position Strand Gene LocusTag Fraction Cholin acetate 30 mM
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3,405,522 + Shewana3_2845 0.18 +1.9
3,405,830 - +0.9
3,405,879 + -1.8
3,405,887 - -1.8
3,406,231 + +0.6
3,406,240 - -1.6
3,406,308 - -0.1
3,406,308 - -0.1
3,408,221 + +0.7
3,408,227 + +0.2
3,408,235 - -0.1
3,408,320 + Shewana3_2847 0.25 -0.5
3,408,320 + Shewana3_2847 0.25 +0.0
3,408,328 - Shewana3_2847 0.29 +0.7
3,408,328 - Shewana3_2847 0.29 -0.5
3,408,345 + Shewana3_2847 0.38 +0.2
3,408,481 + +0.0
3,408,538 + -0.0
3,408,655 + +0.6
3,409,025 - Shewana3_2848 0.24 -0.1
3,409,062 + Shewana3_2848 0.26 +0.4

Or see this region's nucleotide sequence