Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2526

Experiment: Cholin acetate 30 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2524 and grxA are separated by 60 nucleotidesgrxA and Shewana3_2526 are separated by 58 nucleotidesShewana3_2526 and Shewana3_R0104 are separated by 167 nucleotidesShewana3_R0104 and Shewana3_R0105 are separated by 160 nucleotidesShewana3_R0105 and Shewana3_R0106 are separated by 160 nucleotidesShewana3_R0106 and Shewana3_R0107 are separated by 35 nucleotidesShewana3_R0107 and Shewana3_R0108 are separated by 36 nucleotidesShewana3_R0108 and Shewana3_R0109 are separated by 35 nucleotides Shewana3_2524: Shewana3_2524 - type III restriction enzyme, res subunit (RefSeq), at 3,021,537 to 3,023,309 _2524 Shewana3_2525: grxA - glutaredoxin 1 (RefSeq), at 3,023,370 to 3,023,630 grxA Shewana3_2526: Shewana3_2526 - hypothetical protein (RefSeq), at 3,023,689 to 3,024,852 _2526 Shewana3_R0104: Shewana3_R0104 - tRNA-Lys (RefSeq), at 3,025,020 to 3,025,095 _R0104 Shewana3_R0105: Shewana3_R0105 - tRNA-Lys (RefSeq), at 3,025,256 to 3,025,331 _R0105 Shewana3_R0106: Shewana3_R0106 - tRNA-Lys (RefSeq), at 3,025,492 to 3,025,567 _R0106 Shewana3_R0107: Shewana3_R0107 - tRNA-Lys (RefSeq), at 3,025,603 to 3,025,678 _R0107 Shewana3_R0108: Shewana3_R0108 - tRNA-Lys (RefSeq), at 3,025,715 to 3,025,790 _R0108 Shewana3_R0109: Shewana3_R0109 - tRNA-Lys (RefSeq), at 3,025,826 to 3,025,901 _R0109 Position (kb) 3023 3024 3025Strain fitness (log2 ratio) -1 0 1at 3022.864 kb on - strand, within Shewana3_2524at 3022.878 kb on + strand, within Shewana3_2524at 3023.198 kb on - strandat 3023.335 kb on - strandat 3023.755 kb on + strandat 3023.775 kb on - strandat 3023.855 kb on - strand, within Shewana3_2526at 3023.893 kb on + strand, within Shewana3_2526at 3023.895 kb on + strand, within Shewana3_2526at 3024.256 kb on + strand, within Shewana3_2526at 3024.690 kb on - strand, within Shewana3_2526

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Per-strain Table

Position Strand Gene LocusTag Fraction Cholin acetate 30 mM
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3,022,864 - Shewana3_2524 0.75 +0.9
3,022,878 + Shewana3_2524 0.76 -0.1
3,023,198 - +0.9
3,023,335 - +0.9
3,023,755 + +0.9
3,023,775 - +1.5
3,023,855 - Shewana3_2526 0.14 -1.2
3,023,893 + Shewana3_2526 0.18 +0.9
3,023,895 + Shewana3_2526 0.18 -0.1
3,024,256 + Shewana3_2526 0.49 +0.9
3,024,690 - Shewana3_2526 0.86 +0.9

Or see this region's nucleotide sequence