Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2320

Experiment: Cholin acetate 30 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2318 and def are separated by 210 nucleotidesdef and Shewana3_2320 are separated by 192 nucleotidesShewana3_2320 and Shewana3_2321 are separated by 129 nucleotides Shewana3_2318: Shewana3_2318 - hypothetical protein (RefSeq), at 2,791,094 to 2,791,942 _2318 Shewana3_2319: def - peptide deformylase (RefSeq), at 2,792,153 to 2,792,644 def Shewana3_2320: Shewana3_2320 - methylated-DNA-(protein)-cysteine S-methyltransferase (RefSeq), at 2,792,837 to 2,793,295 _2320 Shewana3_2321: Shewana3_2321 - hypothetical protein (RefSeq), at 2,793,425 to 2,794,237 _2321 Position (kb) 2792 2793 2794Strain fitness (log2 ratio) -2 -1 0 1 2at 2792.300 kb on - strand, within defat 2792.306 kb on + strand, within defat 2792.903 kb on - strand, within Shewana3_2320at 2792.913 kb on - strand, within Shewana3_2320at 2793.055 kb on - strand, within Shewana3_2320at 2793.072 kb on + strand, within Shewana3_2320at 2793.215 kb on - strand, within Shewana3_2320at 2793.327 kb on - strandat 2793.349 kb on - strandat 2793.473 kb on - strandat 2793.717 kb on - strand, within Shewana3_2321at 2793.723 kb on + strand, within Shewana3_2321at 2793.765 kb on + strand, within Shewana3_2321at 2793.928 kb on - strand, within Shewana3_2321at 2793.990 kb on - strand, within Shewana3_2321at 2794.043 kb on + strand, within Shewana3_2321

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Per-strain Table

Position Strand Gene LocusTag Fraction Cholin acetate 30 mM
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2,792,300 - def Shewana3_2319 0.30 +0.3
2,792,306 + def Shewana3_2319 0.31 +1.0
2,792,903 - Shewana3_2320 0.14 -1.0
2,792,913 - Shewana3_2320 0.17 +2.0
2,793,055 - Shewana3_2320 0.47 -1.8
2,793,072 + Shewana3_2320 0.51 +1.0
2,793,215 - Shewana3_2320 0.82 +1.0
2,793,327 - -0.0
2,793,349 - +2.0
2,793,473 - +1.0
2,793,717 - Shewana3_2321 0.36 -0.0
2,793,723 + Shewana3_2321 0.37 -1.8
2,793,765 + Shewana3_2321 0.42 +0.6
2,793,928 - Shewana3_2321 0.62 +1.0
2,793,990 - Shewana3_2321 0.69 +1.0
2,794,043 + Shewana3_2321 0.76 +0.4

Or see this region's nucleotide sequence