Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2266

Experiment: Cholin acetate 30 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2264 and Shewana3_2265 are separated by 193 nucleotidesShewana3_2265 and Shewana3_2266 are separated by 68 nucleotidesShewana3_2266 and Shewana3_2267 are separated by 132 nucleotides Shewana3_2264: Shewana3_2264 - sulphate transporter (RefSeq), at 2,724,842 to 2,726,599 _2264 Shewana3_2265: Shewana3_2265 - lysine exporter protein LysE/YggA (RefSeq), at 2,726,793 to 2,727,419 _2265 Shewana3_2266: Shewana3_2266 - GntR family transcriptional regulator (RefSeq), at 2,727,488 to 2,728,870 _2266 Shewana3_2267: Shewana3_2267 - alkaline phosphatase (RefSeq), at 2,729,003 to 2,730,877 _2267 Position (kb) 2727 2728 2729Strain fitness (log2 ratio) -2 -1 0 1 2at 2726.586 kb on - strandat 2726.764 kb on + strandat 2726.830 kb on - strandat 2727.016 kb on - strand, within Shewana3_2265at 2727.078 kb on - strand, within Shewana3_2265at 2727.084 kb on - strand, within Shewana3_2265at 2727.248 kb on - strand, within Shewana3_2265at 2727.561 kb on + strandat 2727.610 kb on + strandat 2727.685 kb on + strand, within Shewana3_2266at 2727.687 kb on + strand, within Shewana3_2266at 2727.906 kb on + strand, within Shewana3_2266at 2727.954 kb on + strand, within Shewana3_2266at 2728.241 kb on + strand, within Shewana3_2266at 2728.398 kb on + strand, within Shewana3_2266at 2728.524 kb on + strand, within Shewana3_2266at 2728.625 kb on + strand, within Shewana3_2266at 2728.655 kb on + strand, within Shewana3_2266at 2728.715 kb on + strand, within Shewana3_2266at 2728.830 kb on + strandat 2729.019 kb on - strandat 2729.094 kb on - strandat 2729.438 kb on + strand, within Shewana3_2267at 2729.540 kb on - strand, within Shewana3_2267at 2729.605 kb on + strand, within Shewana3_2267at 2729.822 kb on - strand, within Shewana3_2267

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Per-strain Table

Position Strand Gene LocusTag Fraction Cholin acetate 30 mM
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2,726,586 - +2.0
2,726,764 + +1.0
2,726,830 - -1.0
2,727,016 - Shewana3_2265 0.36 -1.9
2,727,078 - Shewana3_2265 0.45 -1.4
2,727,084 - Shewana3_2265 0.46 +1.0
2,727,248 - Shewana3_2265 0.73 -1.6
2,727,561 + +0.5
2,727,610 + -1.7
2,727,685 + Shewana3_2266 0.14 +0.2
2,727,687 + Shewana3_2266 0.14 +0.5
2,727,906 + Shewana3_2266 0.30 +1.0
2,727,954 + Shewana3_2266 0.34 +1.7
2,728,241 + Shewana3_2266 0.54 -0.1
2,728,398 + Shewana3_2266 0.66 +0.6
2,728,524 + Shewana3_2266 0.75 -0.4
2,728,625 + Shewana3_2266 0.82 +0.1
2,728,655 + Shewana3_2266 0.84 +0.1
2,728,715 + Shewana3_2266 0.89 +0.2
2,728,830 + +0.3
2,729,019 - +0.0
2,729,094 - -1.6
2,729,438 + Shewana3_2267 0.23 +1.0
2,729,540 - Shewana3_2267 0.29 -2.2
2,729,605 + Shewana3_2267 0.32 +1.0
2,729,822 - Shewana3_2267 0.44 +1.0

Or see this region's nucleotide sequence