Experiment: Cholin acetate 30 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2250 and Shewana3_2251 are separated by 119 nucleotides Shewana3_2251 and Shewana3_2252 are separated by 104 nucleotides Shewana3_2252 and Shewana3_2253 are separated by 218 nucleotides
Shewana3_2250: Shewana3_2250 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 2,711,588 to 2,712,895
_2250
Shewana3_2251: Shewana3_2251 - DNA polymerase III, epsilon subunit (RefSeq), at 2,713,015 to 2,713,704
_2251
Shewana3_2252: Shewana3_2252 - LacI family transcription regulator (RefSeq), at 2,713,809 to 2,714,849
_2252
Shewana3_2253: Shewana3_2253 - hypothetical protein (RefSeq), at 2,715,068 to 2,715,784
_2253
Position (kb)
2713
2714
2715 Strain fitness (log2 ratio)
-1
0
1 at 2713.259 kb on + strand, within Shewana3_2251 at 2713.301 kb on + strand, within Shewana3_2251 at 2713.568 kb on + strand, within Shewana3_2251 at 2713.709 kb on + strand at 2714.166 kb on - strand, within Shewana3_2252 at 2714.454 kb on + strand, within Shewana3_2252 at 2714.651 kb on - strand, within Shewana3_2252 at 2715.074 kb on + strand at 2715.120 kb on + strand at 2715.163 kb on - strand, within Shewana3_2253 at 2715.183 kb on + strand, within Shewana3_2253 at 2715.183 kb on + strand, within Shewana3_2253 at 2715.321 kb on - strand, within Shewana3_2253 at 2715.658 kb on + strand, within Shewana3_2253 at 2715.658 kb on + strand, within Shewana3_2253 at 2715.658 kb on + strand, within Shewana3_2253
Per-strain Table
Position Strand Gene LocusTag Fraction Cholin acetate 30 mM remove 2,713,259 + Shewana3_2251 0.35 -0.6 2,713,301 + Shewana3_2251 0.41 -0.0 2,713,568 + Shewana3_2251 0.80 +1.0 2,713,709 + +1.0 2,714,166 - Shewana3_2252 0.34 -0.4 2,714,454 + Shewana3_2252 0.62 +1.0 2,714,651 - Shewana3_2252 0.81 -0.6 2,715,074 + -0.0 2,715,120 + +1.0 2,715,163 - Shewana3_2253 0.13 -0.8 2,715,183 + Shewana3_2253 0.16 +1.0 2,715,183 + Shewana3_2253 0.16 -0.0 2,715,321 - Shewana3_2253 0.35 +1.0 2,715,658 + Shewana3_2253 0.82 -1.0 2,715,658 + Shewana3_2253 0.82 +1.0 2,715,658 + Shewana3_2253 0.82 +0.4
Or see this region's nucleotide sequence