Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1739

Experiment: Cholin acetate 30 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_1737 and Shewana3_1738 are separated by 88 nucleotidesShewana3_1738 and Shewana3_1739 are separated by 138 nucleotidesShewana3_1739 and Shewana3_1740 are separated by 290 nucleotides Shewana3_1737: Shewana3_1737 - FAD linked oxidase domain-containing protein (RefSeq), at 2,046,778 to 2,049,819 _1737 Shewana3_1738: Shewana3_1738 - hypothetical protein (RefSeq), at 2,049,908 to 2,050,396 _1738 Shewana3_1739: Shewana3_1739 - MarR family transcriptional regulator (RefSeq), at 2,050,535 to 2,050,966 _1739 Shewana3_1740: Shewana3_1740 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 2,051,257 to 2,055,042 _1740 Position (kb) 2050 2051Strain fitness (log2 ratio) -1 0 1at 2050.046 kb on + strand, within Shewana3_1738at 2050.054 kb on - strand, within Shewana3_1738at 2050.056 kb on + strand, within Shewana3_1738at 2050.056 kb on + strand, within Shewana3_1738at 2050.840 kb on + strand, within Shewana3_1739at 2051.367 kb on + strandat 2051.367 kb on + strandat 2051.375 kb on - strandat 2051.375 kb on - strandat 2051.741 kb on + strand, within Shewana3_1740at 2051.796 kb on + strand, within Shewana3_1740at 2051.927 kb on - strand, within Shewana3_1740at 2051.960 kb on - strand, within Shewana3_1740

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Cholin acetate 30 mM
remove
2,050,046 + Shewana3_1738 0.28 -0.5
2,050,054 - Shewana3_1738 0.30 +1.0
2,050,056 + Shewana3_1738 0.30 -1.0
2,050,056 + Shewana3_1738 0.30 +1.0
2,050,840 + Shewana3_1739 0.71 -0.8
2,051,367 + +0.4
2,051,367 + +1.0
2,051,375 - -0.6
2,051,375 - -0.6
2,051,741 + Shewana3_1740 0.13 +1.5
2,051,796 + Shewana3_1740 0.14 -1.0
2,051,927 - Shewana3_1740 0.18 +1.0
2,051,960 - Shewana3_1740 0.19 -0.6

Or see this region's nucleotide sequence