Experiment: Cholin acetate 30 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1629 and Shewana3_1630 are separated by 366 nucleotides Shewana3_1630 and Shewana3_1631 are separated by 190 nucleotides Shewana3_1631 and Shewana3_1632 are separated by 31 nucleotides
Shewana3_1629: Shewana3_1629 - hypothetical protein (RefSeq), at 1,917,254 to 1,917,610
_1629
Shewana3_1630: Shewana3_1630 - hypothetical protein (RefSeq), at 1,917,977 to 1,918,360
_1630
Shewana3_1631: Shewana3_1631 - hypothetical protein (RefSeq), at 1,918,551 to 1,919,516
_1631
Shewana3_1632: Shewana3_1632 - multi-sensor signal transduction histidine kinase (RefSeq), at 1,919,548 to 1,922,166
_1632
Position (kb) 1918
1919
1920 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1917.555 kb on - strand, within Shewana3_1629 at 1917.956 kb on - strand at 1917.983 kb on - strand at 1918.213 kb on + strand, within Shewana3_1630 at 1918.626 kb on - strand at 1918.925 kb on + strand, within Shewana3_1631 at 1918.932 kb on + strand, within Shewana3_1631 at 1919.344 kb on + strand, within Shewana3_1631 at 1919.471 kb on + strand at 1919.487 kb on + strand at 1920.056 kb on + strand, within Shewana3_1632 at 1920.084 kb on - strand, within Shewana3_1632 at 1920.118 kb on - strand, within Shewana3_1632 at 1920.146 kb on - strand, within Shewana3_1632 at 1920.167 kb on + strand, within Shewana3_1632 at 1920.268 kb on - strand, within Shewana3_1632 at 1920.296 kb on + strand, within Shewana3_1632 at 1920.304 kb on - strand, within Shewana3_1632 at 1920.329 kb on - strand, within Shewana3_1632
Per-strain Table
Position Strand Gene LocusTag Fraction Cholin acetate 30 mM remove 1,917,555 - Shewana3_1629 0.84 +0.9 1,917,956 - +0.9 1,917,983 - +0.9 1,918,213 + Shewana3_1630 0.61 +0.9 1,918,626 - +0.9 1,918,925 + Shewana3_1631 0.39 +1.5 1,918,932 + Shewana3_1631 0.39 -0.4 1,919,344 + Shewana3_1631 0.82 +1.9 1,919,471 + -1.9 1,919,487 + +0.9 1,920,056 + Shewana3_1632 0.19 +0.9 1,920,084 - Shewana3_1632 0.20 +1.9 1,920,118 - Shewana3_1632 0.22 +0.9 1,920,146 - Shewana3_1632 0.23 -0.1 1,920,167 + Shewana3_1632 0.24 +0.9 1,920,268 - Shewana3_1632 0.27 +0.9 1,920,296 + Shewana3_1632 0.29 +0.7 1,920,304 - Shewana3_1632 0.29 +0.9 1,920,329 - Shewana3_1632 0.30 +0.9
Or see this region's nucleotide sequence