Experiment: Cholin acetate 30 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1412 and Shewana3_1413 overlap by 4 nucleotides Shewana3_1413 and Shewana3_1414 are separated by 98 nucleotides
Shewana3_1412: Shewana3_1412 - two component, sigma54 specific, Fis family transcriptional regulator (RefSeq), at 1,635,442 to 1,636,821
_1412
Shewana3_1413: Shewana3_1413 - ATPase domain-containing protein (RefSeq), at 1,636,818 to 1,638,629
_1413
Shewana3_1414: Shewana3_1414 - TRAP dicarboxylate transporter, DctM subunit (RefSeq), at 1,638,728 to 1,640,125
_1414
Position (kb)
1636
1637
1638
1639 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1636.232 kb on - strand, within Shewana3_1412 at 1636.331 kb on - strand, within Shewana3_1412 at 1636.386 kb on + strand, within Shewana3_1412 at 1636.483 kb on + strand, within Shewana3_1412 at 1636.819 kb on + strand at 1636.906 kb on - strand at 1636.966 kb on - strand at 1637.072 kb on + strand, within Shewana3_1413 at 1637.244 kb on + strand, within Shewana3_1413 at 1637.468 kb on + strand, within Shewana3_1413 at 1637.529 kb on - strand, within Shewana3_1413 at 1637.585 kb on - strand, within Shewana3_1413 at 1637.713 kb on + strand, within Shewana3_1413 at 1637.774 kb on + strand, within Shewana3_1413 at 1637.841 kb on - strand, within Shewana3_1413 at 1638.127 kb on + strand, within Shewana3_1413 at 1638.178 kb on - strand, within Shewana3_1413 at 1638.178 kb on - strand, within Shewana3_1413 at 1638.180 kb on - strand, within Shewana3_1413 at 1638.208 kb on + strand, within Shewana3_1413 at 1638.208 kb on + strand, within Shewana3_1413 at 1638.208 kb on + strand, within Shewana3_1413 at 1638.285 kb on + strand, within Shewana3_1413 at 1638.350 kb on + strand, within Shewana3_1413 at 1638.350 kb on + strand, within Shewana3_1413 at 1638.807 kb on + strand at 1638.817 kb on + strand at 1638.822 kb on + strand at 1638.832 kb on + strand at 1638.897 kb on - strand, within Shewana3_1414 at 1638.929 kb on - strand, within Shewana3_1414 at 1639.077 kb on - strand, within Shewana3_1414 at 1639.093 kb on + strand, within Shewana3_1414 at 1639.220 kb on - strand, within Shewana3_1414 at 1639.282 kb on - strand, within Shewana3_1414 at 1639.449 kb on + strand, within Shewana3_1414 at 1639.475 kb on + strand, within Shewana3_1414 at 1639.477 kb on - strand, within Shewana3_1414
Per-strain Table
Position Strand Gene LocusTag Fraction Cholin acetate 30 mM remove 1,636,232 - Shewana3_1412 0.57 +0.9 1,636,331 - Shewana3_1412 0.64 +0.9 1,636,386 + Shewana3_1412 0.68 -0.1 1,636,483 + Shewana3_1412 0.75 +0.9 1,636,819 + +0.9 1,636,906 - -0.1 1,636,966 - +0.9 1,637,072 + Shewana3_1413 0.14 -1.7 1,637,244 + Shewana3_1413 0.24 +0.4 1,637,468 + Shewana3_1413 0.36 -1.1 1,637,529 - Shewana3_1413 0.39 -0.7 1,637,585 - Shewana3_1413 0.42 +0.9 1,637,713 + Shewana3_1413 0.49 -0.4 1,637,774 + Shewana3_1413 0.53 +0.6 1,637,841 - Shewana3_1413 0.56 -0.7 1,638,127 + Shewana3_1413 0.72 +1.3 1,638,178 - Shewana3_1413 0.75 +0.9 1,638,178 - Shewana3_1413 0.75 -0.1 1,638,180 - Shewana3_1413 0.75 -0.1 1,638,208 + Shewana3_1413 0.77 +0.9 1,638,208 + Shewana3_1413 0.77 -0.7 1,638,208 + Shewana3_1413 0.77 +2.5 1,638,285 + Shewana3_1413 0.81 -1.0 1,638,350 + Shewana3_1413 0.85 -1.7 1,638,350 + Shewana3_1413 0.85 +2.5 1,638,807 + -0.4 1,638,817 + +0.9 1,638,822 + -0.1 1,638,832 + +0.4 1,638,897 - Shewana3_1414 0.12 +0.8 1,638,929 - Shewana3_1414 0.14 -0.5 1,639,077 - Shewana3_1414 0.25 -0.7 1,639,093 + Shewana3_1414 0.26 -0.1 1,639,220 - Shewana3_1414 0.35 +0.0 1,639,282 - Shewana3_1414 0.40 +0.9 1,639,449 + Shewana3_1414 0.52 -0.1 1,639,475 + Shewana3_1414 0.53 -1.2 1,639,477 - Shewana3_1414 0.54 +2.8
Or see this region's nucleotide sequence