Experiment: Cholin acetate 30 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0735 and Shewana3_0736 are separated by 142 nucleotides Shewana3_0736 and Shewana3_0737 are separated by 168 nucleotides Shewana3_0737 and Shewana3_0738 are separated by 120 nucleotides
Shewana3_0735: Shewana3_0735 - UBA/THIF-type NAD/FAD binding protein (RefSeq), at 854,196 to 855,029
_0735
Shewana3_0736: Shewana3_0736 - ATPase domain-containing protein (RefSeq), at 855,172 to 856,803
_0736
Shewana3_0737: Shewana3_0737 - hypothetical protein (RefSeq), at 856,972 to 857,583
_0737
Shewana3_0738: Shewana3_0738 - hypothetical protein (RefSeq), at 857,704 to 857,835
_0738
Position (kb) 855
856
857 Strain fitness (log2 ratio) -2
-1
0
1
2 at 854.198 kb on - strand at 854.245 kb on + strand at 854.245 kb on + strand at 854.542 kb on + strand, within Shewana3_0735 at 854.581 kb on + strand, within Shewana3_0735 at 854.675 kb on - strand, within Shewana3_0735 at 854.855 kb on - strand, within Shewana3_0735 at 855.105 kb on + strand at 855.220 kb on + strand at 855.295 kb on - strand at 855.325 kb on + strand at 855.325 kb on + strand at 855.333 kb on - strand at 855.333 kb on - strand at 855.333 kb on - strand at 855.333 kb on - strand at 855.333 kb on - strand at 855.333 kb on - strand at 855.484 kb on + strand, within Shewana3_0736 at 855.493 kb on + strand, within Shewana3_0736 at 855.561 kb on - strand, within Shewana3_0736 at 855.580 kb on - strand, within Shewana3_0736 at 855.677 kb on - strand, within Shewana3_0736 at 855.735 kb on - strand, within Shewana3_0736 at 855.973 kb on + strand, within Shewana3_0736 at 855.991 kb on - strand, within Shewana3_0736 at 856.289 kb on - strand, within Shewana3_0736 at 856.412 kb on - strand, within Shewana3_0736 at 856.710 kb on + strand at 856.727 kb on + strand at 856.962 kb on + strand at 857.079 kb on + strand, within Shewana3_0737 at 857.141 kb on + strand, within Shewana3_0737 at 857.184 kb on + strand, within Shewana3_0737 at 857.557 kb on + strand at 857.564 kb on + strand at 857.565 kb on - strand at 857.572 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cholin acetate 30 mM remove 854,198 - -0.1 854,245 + +0.0 854,245 + -0.1 854,542 + Shewana3_0735 0.41 -0.7 854,581 + Shewana3_0735 0.46 -0.1 854,675 - Shewana3_0735 0.57 -1.5 854,855 - Shewana3_0735 0.79 -1.0 855,105 + +2.0 855,220 + -2.0 855,295 - +0.5 855,325 + +0.4 855,325 + +0.3 855,333 - -0.7 855,333 - -0.1 855,333 - +0.6 855,333 - -0.3 855,333 - -0.2 855,333 - +0.4 855,484 + Shewana3_0736 0.19 -0.8 855,493 + Shewana3_0736 0.20 +0.1 855,561 - Shewana3_0736 0.24 -1.4 855,580 - Shewana3_0736 0.25 -0.9 855,677 - Shewana3_0736 0.31 +1.0 855,735 - Shewana3_0736 0.34 +0.4 855,973 + Shewana3_0736 0.49 -1.1 855,991 - Shewana3_0736 0.50 -0.8 856,289 - Shewana3_0736 0.68 -1.3 856,412 - Shewana3_0736 0.76 -0.0 856,710 + +0.2 856,727 + -0.2 856,962 + -0.3 857,079 + Shewana3_0737 0.17 -0.5 857,141 + Shewana3_0737 0.28 +0.0 857,184 + Shewana3_0737 0.35 +0.3 857,557 + +0.3 857,564 + -0.3 857,565 - +0.6 857,572 - -0.0
Or see this region's nucleotide sequence