Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0735

Experiment: Cholin acetate 30 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0734 and Shewana3_0735 are separated by 416 nucleotidesShewana3_0735 and Shewana3_0736 are separated by 142 nucleotides Shewana3_0734: Shewana3_0734 - porin (RefSeq), at 852,715 to 853,779 _0734 Shewana3_0735: Shewana3_0735 - UBA/THIF-type NAD/FAD binding protein (RefSeq), at 854,196 to 855,029 _0735 Shewana3_0736: Shewana3_0736 - ATPase domain-containing protein (RefSeq), at 855,172 to 856,803 _0736 Position (kb) 854 855 856Strain fitness (log2 ratio) -2 -1 0 1 2at 853.359 kb on - strand, within Shewana3_0734at 853.409 kb on - strand, within Shewana3_0734at 853.592 kb on + strand, within Shewana3_0734at 853.846 kb on - strandat 853.851 kb on - strandat 853.851 kb on - strandat 853.859 kb on - strandat 854.042 kb on + strandat 854.122 kb on + strandat 854.132 kb on + strandat 854.132 kb on + strandat 854.132 kb on + strandat 854.132 kb on + strandat 854.132 kb on + strandat 854.153 kb on + strandat 854.198 kb on - strandat 854.245 kb on + strandat 854.245 kb on + strandat 854.542 kb on + strand, within Shewana3_0735at 854.581 kb on + strand, within Shewana3_0735at 854.675 kb on - strand, within Shewana3_0735at 854.855 kb on - strand, within Shewana3_0735at 855.105 kb on + strandat 855.220 kb on + strandat 855.295 kb on - strandat 855.325 kb on + strandat 855.325 kb on + strandat 855.333 kb on - strandat 855.333 kb on - strandat 855.333 kb on - strandat 855.333 kb on - strandat 855.333 kb on - strandat 855.333 kb on - strandat 855.484 kb on + strand, within Shewana3_0736at 855.493 kb on + strand, within Shewana3_0736at 855.561 kb on - strand, within Shewana3_0736at 855.580 kb on - strand, within Shewana3_0736at 855.677 kb on - strand, within Shewana3_0736at 855.735 kb on - strand, within Shewana3_0736at 855.973 kb on + strand, within Shewana3_0736at 855.991 kb on - strand, within Shewana3_0736

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Per-strain Table

Position Strand Gene LocusTag Fraction Cholin acetate 30 mM
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853,359 - Shewana3_0734 0.60 +0.5
853,409 - Shewana3_0734 0.65 +0.1
853,592 + Shewana3_0734 0.82 +2.6
853,846 - -0.8
853,851 - +0.1
853,851 - -0.3
853,859 - +0.1
854,042 + -0.3
854,122 + +0.2
854,132 + -0.6
854,132 + -0.3
854,132 + -0.3
854,132 + -0.0
854,132 + -0.2
854,153 + -0.2
854,198 - -0.1
854,245 + +0.0
854,245 + -0.1
854,542 + Shewana3_0735 0.41 -0.7
854,581 + Shewana3_0735 0.46 -0.1
854,675 - Shewana3_0735 0.57 -1.5
854,855 - Shewana3_0735 0.79 -1.0
855,105 + +2.0
855,220 + -2.0
855,295 - +0.5
855,325 + +0.4
855,325 + +0.3
855,333 - -0.7
855,333 - -0.1
855,333 - +0.6
855,333 - -0.3
855,333 - -0.2
855,333 - +0.4
855,484 + Shewana3_0736 0.19 -0.8
855,493 + Shewana3_0736 0.20 +0.1
855,561 - Shewana3_0736 0.24 -1.4
855,580 - Shewana3_0736 0.25 -0.9
855,677 - Shewana3_0736 0.31 +1.0
855,735 - Shewana3_0736 0.34 +0.4
855,973 + Shewana3_0736 0.49 -1.1
855,991 - Shewana3_0736 0.50 -0.8

Or see this region's nucleotide sequence