Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0706

Experiment: Cholin acetate 30 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0705 and Shewana3_0706 overlap by 17 nucleotidesShewana3_0706 and Shewana3_0707 overlap by 1 nucleotidesShewana3_0707 and thiH are separated by 0 nucleotides Shewana3_0705: Shewana3_0705 - small GTP-binding protein (RefSeq), at 819,881 to 821,119 _0705 Shewana3_0706: Shewana3_0706 - biotin synthase (RefSeq), at 821,103 to 822,182 _0706 Shewana3_0707: Shewana3_0707 - hypothetical protein (RefSeq), at 822,182 to 822,820 _0707 Shewana3_0708: thiH - thiamine biosynthesis protein ThiH (RefSeq), at 822,821 to 824,260 thiH Position (kb) 821 822 823Strain fitness (log2 ratio) -2 -1 0 1 2at 820.271 kb on - strand, within Shewana3_0705at 820.655 kb on + strand, within Shewana3_0705at 820.686 kb on + strand, within Shewana3_0705at 820.700 kb on + strand, within Shewana3_0705at 820.785 kb on - strand, within Shewana3_0705at 820.880 kb on + strand, within Shewana3_0705at 821.011 kb on + strandat 821.109 kb on + strandat 821.144 kb on + strandat 821.144 kb on + strandat 821.144 kb on + strandat 821.170 kb on - strandat 821.402 kb on + strand, within Shewana3_0706at 821.402 kb on + strand, within Shewana3_0706at 821.584 kb on - strand, within Shewana3_0706at 821.841 kb on + strand, within Shewana3_0706at 821.854 kb on - strand, within Shewana3_0706at 821.877 kb on - strand, within Shewana3_0706at 822.083 kb on + strandat 822.102 kb on + strandat 822.268 kb on + strand, within Shewana3_0707at 822.268 kb on + strand, within Shewana3_0707at 822.352 kb on - strand, within Shewana3_0707at 822.352 kb on - strand, within Shewana3_0707at 822.365 kb on - strand, within Shewana3_0707at 822.572 kb on - strand, within Shewana3_0707at 822.618 kb on + strand, within Shewana3_0707at 822.630 kb on - strand, within Shewana3_0707at 822.874 kb on + strandat 822.882 kb on - strandat 822.926 kb on - strandat 822.981 kb on - strand, within thiHat 822.981 kb on - strand, within thiHat 823.154 kb on + strand, within thiH

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Per-strain Table

Position Strand Gene LocusTag Fraction Cholin acetate 30 mM
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820,271 - Shewana3_0705 0.31 -0.3
820,655 + Shewana3_0705 0.62 -0.4
820,686 + Shewana3_0705 0.65 +0.4
820,700 + Shewana3_0705 0.66 -0.2
820,785 - Shewana3_0705 0.73 +1.0
820,880 + Shewana3_0705 0.81 +0.4
821,011 + +0.7
821,109 + -0.4
821,144 + -0.1
821,144 + -0.4
821,144 + +0.1
821,170 - +0.8
821,402 + Shewana3_0706 0.28 -0.4
821,402 + Shewana3_0706 0.28 -0.2
821,584 - Shewana3_0706 0.45 -1.0
821,841 + Shewana3_0706 0.68 -1.0
821,854 - Shewana3_0706 0.70 -1.2
821,877 - Shewana3_0706 0.72 -2.0
822,083 + -0.9
822,102 + +0.7
822,268 + Shewana3_0707 0.13 +0.3
822,268 + Shewana3_0707 0.13 +0.4
822,352 - Shewana3_0707 0.27 +0.2
822,352 - Shewana3_0707 0.27 +1.0
822,365 - Shewana3_0707 0.29 -1.7
822,572 - Shewana3_0707 0.61 -0.6
822,618 + Shewana3_0707 0.68 +1.0
822,630 - Shewana3_0707 0.70 -1.0
822,874 + +2.6
822,882 - +1.6
822,926 - -0.3
822,981 - thiH Shewana3_0708 0.11 +0.4
822,981 - thiH Shewana3_0708 0.11 +0.3
823,154 + thiH Shewana3_0708 0.23 +0.1

Or see this region's nucleotide sequence