Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0664

Experiment: Cholin acetate 30 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0663 and Shewana3_0664 are separated by 725 nucleotidesShewana3_0664 and Shewana3_0665 are separated by 655 nucleotides Shewana3_0663: Shewana3_0663 - protein of unknown function RIO1 (RefSeq), at 784,206 to 785,063 _0663 Shewana3_0664: Shewana3_0664 - transposase IS3/IS911 family protein (RefSeq), at 785,789 to 786,022 _0664 Shewana3_0665: Shewana3_0665 - OmpA/MotB domain-containing protein (RefSeq), at 786,678 to 787,370 _0665 Position (kb) 785 786 787Strain fitness (log2 ratio) -2 -1 0 1at 784.855 kb on + strand, within Shewana3_0663at 784.956 kb on + strand, within Shewana3_0663at 785.162 kb on - strandat 785.255 kb on - strandat 785.343 kb on + strandat 785.343 kb on + strandat 785.351 kb on - strandat 785.401 kb on + strandat 785.623 kb on + strandat 785.638 kb on - strandat 785.721 kb on + strandat 785.742 kb on - strandat 785.787 kb on + strandat 785.801 kb on + strandat 785.821 kb on + strand, within Shewana3_0664at 786.038 kb on + strandat 786.097 kb on + strandat 786.105 kb on - strandat 786.118 kb on + strandat 786.118 kb on + strandat 786.120 kb on - strandat 786.126 kb on - strandat 786.126 kb on - strandat 786.128 kb on - strandat 786.145 kb on - strandat 786.291 kb on - strandat 786.306 kb on - strandat 786.316 kb on - strandat 786.436 kb on - strandat 786.624 kb on + strandat 786.624 kb on + strandat 786.763 kb on + strand, within Shewana3_0665

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Per-strain Table

Position Strand Gene LocusTag Fraction Cholin acetate 30 mM
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784,855 + Shewana3_0663 0.76 +0.1
784,956 + Shewana3_0663 0.87 -0.4
785,162 - -0.1
785,255 - -1.0
785,343 + -0.2
785,343 + +0.1
785,351 - +0.0
785,401 + +0.4
785,623 + +0.0
785,638 - -0.3
785,721 + -1.0
785,742 - +0.3
785,787 + -0.6
785,801 + -0.3
785,821 + Shewana3_0664 0.14 -0.8
786,038 + +1.0
786,097 + -1.3
786,105 - +0.2
786,118 + -0.3
786,118 + -0.0
786,120 - -2.0
786,126 - +0.5
786,126 - -0.4
786,128 - -0.7
786,145 - -0.2
786,291 - +0.2
786,306 - +0.1
786,316 - +0.2
786,436 - -0.2
786,624 + -0.1
786,624 + -0.1
786,763 + Shewana3_0665 0.12 +0.1

Or see this region's nucleotide sequence