Experiment: Cholin acetate 30 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4192 and Shewana3_4193 are separated by 130 nucleotides Shewana3_4193 and Shewana3_4194 are separated by 93 nucleotides Shewana3_4194 and Shewana3_4195 are separated by 128 nucleotides Shewana3_4195 and Shewana3_4196 are separated by 121 nucleotides
Shewana3_4192: Shewana3_4192 - hypothetical protein (RefSeq), at 55,345 to 55,773
_4192
Shewana3_4193: Shewana3_4193 - hypothetical protein (RefSeq), at 55,904 to 56,452
_4193
Shewana3_4194: Shewana3_4194 - C-5 cytosine-specific DNA methylase (RefSeq), at 56,546 to 57,919
_4194
Shewana3_4195: Shewana3_4195 - hypothetical protein (RefSeq), at 58,048 to 58,335
_4195
Shewana3_4196: Shewana3_4196 - hypothetical protein (RefSeq), at 58,457 to 58,891
_4196
Position (kb) 56
57
58 Strain fitness (log2 ratio) -1
0
1 at 55.851 kb on - strand at 56.032 kb on + strand, within Shewana3_4193 at 56.175 kb on + strand, within Shewana3_4193 at 56.229 kb on - strand, within Shewana3_4193 at 56.239 kb on - strand, within Shewana3_4193 at 56.270 kb on + strand, within Shewana3_4193 at 56.273 kb on - strand, within Shewana3_4193 at 56.278 kb on - strand, within Shewana3_4193 at 56.358 kb on - strand, within Shewana3_4193 at 56.538 kb on - strand at 56.770 kb on + strand, within Shewana3_4194 at 56.778 kb on - strand, within Shewana3_4194 at 56.783 kb on - strand, within Shewana3_4194 at 56.795 kb on + strand, within Shewana3_4194 at 56.852 kb on + strand, within Shewana3_4194 at 56.905 kb on + strand, within Shewana3_4194 at 56.913 kb on - strand, within Shewana3_4194 at 56.947 kb on + strand, within Shewana3_4194 at 56.955 kb on - strand, within Shewana3_4194 at 56.991 kb on - strand, within Shewana3_4194 at 57.115 kb on + strand, within Shewana3_4194 at 57.118 kb on - strand, within Shewana3_4194 at 57.120 kb on + strand, within Shewana3_4194 at 57.120 kb on + strand, within Shewana3_4194 at 57.146 kb on - strand, within Shewana3_4194 at 57.221 kb on + strand, within Shewana3_4194 at 57.400 kb on + strand, within Shewana3_4194 at 57.408 kb on - strand, within Shewana3_4194 at 57.512 kb on - strand, within Shewana3_4194 at 57.594 kb on + strand, within Shewana3_4194 at 57.753 kb on - strand, within Shewana3_4194 at 57.755 kb on + strand, within Shewana3_4194 at 57.756 kb on + strand, within Shewana3_4194 at 57.763 kb on - strand, within Shewana3_4194 at 57.764 kb on - strand, within Shewana3_4194 at 57.855 kb on + strand at 57.976 kb on - strand at 57.982 kb on + strand at 57.982 kb on - strand at 58.080 kb on - strand, within Shewana3_4195 at 58.201 kb on - strand, within Shewana3_4195 at 58.219 kb on + strand, within Shewana3_4195 at 58.292 kb on - strand, within Shewana3_4195 at 58.343 kb on + strand at 58.353 kb on + strand at 58.353 kb on + strand at 58.360 kb on + strand at 58.370 kb on + strand at 58.378 kb on - strand at 58.381 kb on + strand at 58.427 kb on - strand at 58.434 kb on + strand at 58.454 kb on + strand at 58.547 kb on - strand, within Shewana3_4196 at 58.564 kb on + strand, within Shewana3_4196 at 58.572 kb on - strand, within Shewana3_4196 at 58.582 kb on - strand, within Shewana3_4196 at 58.586 kb on - strand, within Shewana3_4196 at 58.633 kb on + strand, within Shewana3_4196 at 58.687 kb on - strand, within Shewana3_4196
Per-strain Table
Position Strand Gene LocusTag Fraction Cholin acetate 30 mM remove 55,851 - +0.5 56,032 + Shewana3_4193 0.23 +0.3 56,175 + Shewana3_4193 0.49 -0.3 56,229 - Shewana3_4193 0.59 -0.2 56,239 - Shewana3_4193 0.61 -1.0 56,270 + Shewana3_4193 0.67 -0.0 56,273 - Shewana3_4193 0.67 +0.0 56,278 - Shewana3_4193 0.68 -0.1 56,358 - Shewana3_4193 0.83 -0.1 56,538 - -0.0 56,770 + Shewana3_4194 0.16 -0.0 56,778 - Shewana3_4194 0.17 +0.1 56,783 - Shewana3_4194 0.17 -0.1 56,795 + Shewana3_4194 0.18 -1.6 56,852 + Shewana3_4194 0.22 -1.6 56,905 + Shewana3_4194 0.26 -0.8 56,913 - Shewana3_4194 0.27 +0.1 56,947 + Shewana3_4194 0.29 -0.7 56,955 - Shewana3_4194 0.30 -0.1 56,991 - Shewana3_4194 0.32 -0.1 57,115 + Shewana3_4194 0.41 -0.1 57,118 - Shewana3_4194 0.42 -0.9 57,120 + Shewana3_4194 0.42 +0.8 57,120 + Shewana3_4194 0.42 -0.2 57,146 - Shewana3_4194 0.44 +0.2 57,221 + Shewana3_4194 0.49 +0.1 57,400 + Shewana3_4194 0.62 +0.8 57,408 - Shewana3_4194 0.63 -0.0 57,512 - Shewana3_4194 0.70 -0.3 57,594 + Shewana3_4194 0.76 -0.4 57,753 - Shewana3_4194 0.88 -0.1 57,755 + Shewana3_4194 0.88 -0.7 57,756 + Shewana3_4194 0.88 +0.6 57,763 - Shewana3_4194 0.89 +0.3 57,764 - Shewana3_4194 0.89 +0.8 57,855 + +0.1 57,976 - +0.2 57,982 + +0.1 57,982 - -0.4 58,080 - Shewana3_4195 0.11 -0.6 58,201 - Shewana3_4195 0.53 -0.1 58,219 + Shewana3_4195 0.59 -0.3 58,292 - Shewana3_4195 0.85 -0.0 58,343 + +0.0 58,353 + -0.0 58,353 + +0.3 58,360 + -0.0 58,370 + -0.4 58,378 - -0.2 58,381 + -0.0 58,427 - +0.1 58,434 + -0.1 58,454 + -0.3 58,547 - Shewana3_4196 0.21 -0.2 58,564 + Shewana3_4196 0.25 +0.3 58,572 - Shewana3_4196 0.26 +1.0 58,582 - Shewana3_4196 0.29 -0.5 58,586 - Shewana3_4196 0.30 -0.3 58,633 + Shewana3_4196 0.40 -0.4 58,687 - Shewana3_4196 0.53 +0.1
Or see this region's nucleotide sequence