Experiment: Cytidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5701 and Pf1N1B4_5702 overlap by 14 nucleotides Pf1N1B4_5702 and Pf1N1B4_5703 are separated by 42 nucleotides Pf1N1B4_5703 and Pf1N1B4_5704 are separated by 82 nucleotides Pf1N1B4_5704 and Pf1N1B4_5705 are separated by 162 nucleotides
Pf1N1B4_5701 - FIG00955602: hypothetical protein, at 140,011 to 140,172
_5701
Pf1N1B4_5702 - hypothetical protein, at 140,159 to 140,320
_5702
Pf1N1B4_5703 - FIG00961921: hypothetical protein, at 140,363 to 141,073
_5703
Pf1N1B4_5704 - Long-chain fatty acid transport protein, at 141,156 to 142,475
_5704
Pf1N1B4_5705 - Acetyl-coenzyme A synthetase (EC 6.2.1.1), at 142,638 to 144,539
_5705
Position (kb) 141
142
143 Strain fitness (log2 ratio) -2
-1
0
1
2 at 140.172 kb on + strand at 140.172 kb on + strand at 140.328 kb on - strand at 140.339 kb on + strand at 140.654 kb on + strand, within Pf1N1B4_5703 at 140.654 kb on + strand, within Pf1N1B4_5703 at 140.654 kb on + strand, within Pf1N1B4_5703 at 140.654 kb on + strand, within Pf1N1B4_5703 at 140.655 kb on - strand, within Pf1N1B4_5703 at 140.696 kb on + strand, within Pf1N1B4_5703 at 140.835 kb on - strand, within Pf1N1B4_5703 at 141.049 kb on - strand at 141.218 kb on - strand at 141.218 kb on - strand at 141.660 kb on - strand, within Pf1N1B4_5704 at 141.660 kb on - strand, within Pf1N1B4_5704 at 141.666 kb on + strand, within Pf1N1B4_5704 at 141.667 kb on - strand, within Pf1N1B4_5704 at 141.667 kb on - strand, within Pf1N1B4_5704 at 141.679 kb on + strand, within Pf1N1B4_5704 at 141.680 kb on - strand, within Pf1N1B4_5704 at 141.680 kb on - strand, within Pf1N1B4_5704 at 141.743 kb on - strand, within Pf1N1B4_5704 at 141.761 kb on - strand, within Pf1N1B4_5704 at 141.761 kb on - strand, within Pf1N1B4_5704 at 141.890 kb on - strand, within Pf1N1B4_5704 at 141.946 kb on + strand, within Pf1N1B4_5704 at 142.004 kb on - strand, within Pf1N1B4_5704 at 142.039 kb on + strand, within Pf1N1B4_5704 at 142.040 kb on - strand, within Pf1N1B4_5704 at 142.040 kb on - strand, within Pf1N1B4_5704 at 142.066 kb on + strand, within Pf1N1B4_5704 at 142.112 kb on + strand, within Pf1N1B4_5704 at 142.113 kb on - strand at 142.113 kb on - strand at 142.113 kb on - strand at 142.113 kb on - strand, within Pf1N1B4_5704 at 142.114 kb on + strand, within Pf1N1B4_5704 at 142.173 kb on - strand, within Pf1N1B4_5704 at 142.270 kb on + strand, within Pf1N1B4_5704 at 142.270 kb on + strand, within Pf1N1B4_5704 at 142.270 kb on + strand, within Pf1N1B4_5704 at 142.426 kb on + strand at 142.427 kb on - strand at 142.427 kb on - strand at 142.491 kb on + strand at 142.491 kb on + strand at 142.619 kb on - strand at 142.619 kb on - strand at 142.619 kb on - strand at 142.644 kb on - strand at 142.665 kb on - strand at 142.665 kb on - strand at 142.665 kb on - strand at 142.801 kb on - strand at 142.839 kb on + strand, within Pf1N1B4_5705 at 142.840 kb on - strand, within Pf1N1B4_5705 at 142.978 kb on + strand, within Pf1N1B4_5705 at 143.003 kb on - strand, within Pf1N1B4_5705 at 143.217 kb on - strand, within Pf1N1B4_5705 at 143.303 kb on - strand, within Pf1N1B4_5705 at 143.336 kb on + strand, within Pf1N1B4_5705
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (C) remove 140,172 + -1.8 140,172 + +0.2 140,328 - +1.4 140,339 + -0.2 140,654 + Pf1N1B4_5703 0.41 -0.4 140,654 + Pf1N1B4_5703 0.41 -0.2 140,654 + Pf1N1B4_5703 0.41 +0.8 140,654 + Pf1N1B4_5703 0.41 +2.1 140,655 - Pf1N1B4_5703 0.41 -1.2 140,696 + Pf1N1B4_5703 0.47 -0.2 140,835 - Pf1N1B4_5703 0.66 -0.6 141,049 - -0.2 141,218 - -0.2 141,218 - +0.1 141,660 - Pf1N1B4_5704 0.38 -1.2 141,660 - Pf1N1B4_5704 0.38 +1.4 141,666 + Pf1N1B4_5704 0.39 +0.8 141,667 - Pf1N1B4_5704 0.39 +0.8 141,667 - Pf1N1B4_5704 0.39 -0.2 141,679 + Pf1N1B4_5704 0.40 -0.6 141,680 - Pf1N1B4_5704 0.40 +1.4 141,680 - Pf1N1B4_5704 0.40 +0.1 141,743 - Pf1N1B4_5704 0.44 +0.4 141,761 - Pf1N1B4_5704 0.46 -0.2 141,761 - Pf1N1B4_5704 0.46 +0.4 141,890 - Pf1N1B4_5704 0.56 +0.4 141,946 + Pf1N1B4_5704 0.60 -0.2 142,004 - Pf1N1B4_5704 0.64 +0.4 142,039 + Pf1N1B4_5704 0.67 -1.8 142,040 - Pf1N1B4_5704 0.67 +0.8 142,040 - Pf1N1B4_5704 0.67 +2.4 142,066 + Pf1N1B4_5704 0.69 -0.2 142,112 + Pf1N1B4_5704 0.72 -0.6 142,113 - +0.4 142,113 - -0.2 142,113 - -0.2 142,113 - Pf1N1B4_5704 0.72 +0.5 142,114 + Pf1N1B4_5704 0.73 -0.9 142,173 - Pf1N1B4_5704 0.77 +0.1 142,270 + Pf1N1B4_5704 0.84 +2.1 142,270 + Pf1N1B4_5704 0.84 -0.6 142,270 + Pf1N1B4_5704 0.84 -1.8 142,426 + -2.2 142,427 - -0.2 142,427 - -0.6 142,491 + -0.2 142,491 + -1.2 142,619 - -0.9 142,619 - -1.0 142,619 - +1.4 142,644 - -0.2 142,665 - -0.5 142,665 - -1.0 142,665 - +1.0 142,801 - -1.8 142,839 + Pf1N1B4_5705 0.11 +0.8 142,840 - Pf1N1B4_5705 0.11 +0.8 142,978 + Pf1N1B4_5705 0.18 -1.4 143,003 - Pf1N1B4_5705 0.19 -0.2 143,217 - Pf1N1B4_5705 0.30 +2.1 143,303 - Pf1N1B4_5705 0.35 +0.4 143,336 + Pf1N1B4_5705 0.37 -1.2
Or see this region's nucleotide sequence