Experiment: Cytidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5370 and Pf1N1B4_5371 are separated by 55 nucleotides Pf1N1B4_5371 and Pf1N1B4_5372 are separated by 390 nucleotides Pf1N1B4_5372 and Pf1N1B4_5373 are separated by 114 nucleotides
Pf1N1B4_5370 - hypothetical protein, at 102,926 to 103,240
_5370
Pf1N1B4_5371 - hypothetical protein, at 103,296 to 103,496
_5371
Pf1N1B4_5372 - hypothetical protein, at 103,887 to 104,117
_5372
Pf1N1B4_5373 - hypothetical protein, at 104,232 to 104,420
_5373
Position (kb) 103
104 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 102.382 kb on + strand at 102.382 kb on + strand at 102.425 kb on + strand at 102.446 kb on + strand at 102.451 kb on + strand at 102.451 kb on + strand at 102.456 kb on - strand at 102.456 kb on - strand at 102.477 kb on + strand at 102.477 kb on + strand at 102.497 kb on + strand at 102.497 kb on + strand at 102.497 kb on + strand at 102.497 kb on + strand at 102.497 kb on + strand at 102.497 kb on + strand at 102.497 kb on + strand at 102.497 kb on + strand at 102.498 kb on - strand at 102.498 kb on - strand at 102.498 kb on - strand at 102.498 kb on - strand at 102.560 kb on + strand at 102.561 kb on - strand at 102.627 kb on + strand at 102.843 kb on - strand at 102.843 kb on - strand at 102.853 kb on + strand at 102.859 kb on - strand at 103.126 kb on + strand, within Pf1N1B4_5370 at 103.126 kb on + strand, within Pf1N1B4_5370 at 103.173 kb on + strand, within Pf1N1B4_5370 at 103.238 kb on + strand at 103.244 kb on - strand at 103.244 kb on - strand at 103.244 kb on - strand at 103.261 kb on + strand at 103.261 kb on + strand at 103.262 kb on - strand at 103.262 kb on - strand at 103.284 kb on - strand at 103.291 kb on - strand at 103.291 kb on - strand at 103.344 kb on + strand at 103.345 kb on - strand, within Pf1N1B4_5371 at 103.366 kb on - strand, within Pf1N1B4_5371 at 103.366 kb on - strand at 103.408 kb on + strand, within Pf1N1B4_5371 at 103.542 kb on + strand at 103.542 kb on + strand at 103.543 kb on - strand at 103.543 kb on - strand at 103.543 kb on - strand at 103.543 kb on - strand at 103.593 kb on + strand at 103.593 kb on + strand at 103.594 kb on - strand at 103.594 kb on - strand at 103.717 kb on + strand at 103.720 kb on + strand at 103.720 kb on + strand at 103.721 kb on - strand at 103.752 kb on + strand at 103.767 kb on - strand at 103.807 kb on + strand at 103.899 kb on + strand at 103.899 kb on + strand at 103.899 kb on + strand at 103.899 kb on + strand at 103.899 kb on + strand at 103.900 kb on - strand at 103.900 kb on - strand at 103.900 kb on - strand at 103.900 kb on - strand at 103.900 kb on - strand at 103.900 kb on - strand at 103.900 kb on - strand at 103.900 kb on - strand at 103.900 kb on - strand at 103.900 kb on - strand at 103.900 kb on - strand at 103.900 kb on - strand at 103.900 kb on - strand at 103.900 kb on - strand at 103.900 kb on - strand at 103.900 kb on - strand at 104.094 kb on + strand, within Pf1N1B4_5372 at 104.095 kb on - strand at 104.095 kb on - strand at 104.116 kb on - strand at 104.116 kb on - strand at 104.120 kb on - strand at 104.224 kb on + strand at 104.225 kb on - strand at 104.399 kb on + strand, within Pf1N1B4_5373 at 104.400 kb on - strand, within Pf1N1B4_5373
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (C) remove 102,382 + -0.9 102,382 + +0.7 102,425 + +0.1 102,446 + -1.9 102,451 + -0.7 102,451 + +0.4 102,456 - +0.1 102,456 - +0.1 102,477 + -1.5 102,477 + +0.4 102,497 + -1.7 102,497 + -0.9 102,497 + +1.1 102,497 + +0.5 102,497 + +0.1 102,497 + +0.9 102,497 + -0.8 102,497 + +0.1 102,498 - -0.5 102,498 - -0.5 102,498 - -0.6 102,498 - +0.1 102,560 + +1.1 102,561 - -0.9 102,627 + -1.2 102,843 - -0.7 102,843 - +0.4 102,853 + -2.1 102,859 - -0.2 103,126 + Pf1N1B4_5370 0.63 +0.7 103,126 + Pf1N1B4_5370 0.63 +1.1 103,173 + Pf1N1B4_5370 0.78 -1.4 103,238 + -0.9 103,244 - +0.5 103,244 - +0.1 103,244 - +3.3 103,261 + +1.1 103,261 + -0.7 103,262 - +0.1 103,262 - -0.9 103,284 - -1.2 103,291 - +0.4 103,291 - -0.6 103,344 + +0.1 103,345 - Pf1N1B4_5371 0.24 -2.2 103,366 - Pf1N1B4_5371 0.35 -0.9 103,366 - +1.7 103,408 + Pf1N1B4_5371 0.56 -0.9 103,542 + -0.9 103,542 + +1.1 103,543 - -1.9 103,543 - +0.5 103,543 - +0.4 103,543 - +0.1 103,593 + +1.4 103,593 + +0.1 103,594 - +1.1 103,594 - -0.3 103,717 + +1.7 103,720 + +0.1 103,720 + -0.5 103,721 - +0.4 103,752 + +0.1 103,767 - -1.5 103,807 + -0.9 103,899 + +0.1 103,899 + +2.7 103,899 + -0.4 103,899 + -1.2 103,899 + -1.2 103,900 - +0.1 103,900 - -0.6 103,900 - -2.1 103,900 - -0.3 103,900 - -0.6 103,900 - +0.7 103,900 - -0.9 103,900 - +1.1 103,900 - +0.1 103,900 - -0.9 103,900 - -0.4 103,900 - +1.1 103,900 - -0.5 103,900 - -0.5 103,900 - -0.9 103,900 - -0.3 104,094 + Pf1N1B4_5372 0.90 -0.6 104,095 - -2.5 104,095 - +0.7 104,116 - -1.5 104,116 - -1.9 104,120 - +0.1 104,224 + +0.7 104,225 - +0.6 104,399 + Pf1N1B4_5373 0.88 -0.6 104,400 - Pf1N1B4_5373 0.89 -2.1
Or see this region's nucleotide sequence