Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04500

Experiment: Formate deepwell autotrophic conditions

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04495 and MMP_RS04500 are separated by 57 nucleotidesMMP_RS04500 and MMP_RS04505 are separated by 170 nucleotides MMP_RS04495: MMP_RS04495 - cation:proton antiporter, at 854,998 to 856,164 _RS04495 MMP_RS04500: MMP_RS04500 - adenosylmethionine--8-amino-7-oxononanoate transaminase, at 856,222 to 857,625 _RS04500 MMP_RS04505: MMP_RS04505 - glycine betaine ABC transporter substrate-binding protein, at 857,796 to 858,683 _RS04505 Position (kb) 856 857 858Strain fitness (log2 ratio) -3 -2 -1 0 1at 855.230 kb on - strand, within MMP_RS04495at 855.262 kb on + strand, within MMP_RS04495at 855.540 kb on + strand, within MMP_RS04495at 855.548 kb on - strand, within MMP_RS04495at 855.586 kb on - strand, within MMP_RS04495at 855.825 kb on + strand, within MMP_RS04495at 855.835 kb on - strand, within MMP_RS04495at 855.857 kb on - strand, within MMP_RS04495at 855.857 kb on - strand, within MMP_RS04495at 855.887 kb on - strand, within MMP_RS04495at 855.888 kb on + strand, within MMP_RS04495at 855.888 kb on + strand, within MMP_RS04495at 855.888 kb on + strand, within MMP_RS04495at 855.911 kb on - strand, within MMP_RS04495at 856.023 kb on + strand, within MMP_RS04495at 856.114 kb on + strandat 856.128 kb on - strandat 856.128 kb on - strandat 856.129 kb on + strandat 856.130 kb on - strandat 856.131 kb on + strandat 856.166 kb on + strandat 856.167 kb on - strandat 856.167 kb on - strandat 856.167 kb on - strandat 856.168 kb on + strandat 856.168 kb on + strandat 856.168 kb on + strandat 856.168 kb on + strandat 856.170 kb on - strandat 856.170 kb on - strandat 856.171 kb on + strandat 856.171 kb on + strandat 856.173 kb on + strandat 856.173 kb on + strandat 856.241 kb on + strandat 856.350 kb on + strandat 856.397 kb on - strand, within MMP_RS04500at 856.401 kb on - strand, within MMP_RS04500at 856.402 kb on + strand, within MMP_RS04500at 856.457 kb on - strand, within MMP_RS04500at 856.540 kb on - strand, within MMP_RS04500at 856.600 kb on - strand, within MMP_RS04500at 856.600 kb on - strand, within MMP_RS04500at 856.677 kb on + strand, within MMP_RS04500at 856.678 kb on - strand, within MMP_RS04500at 856.726 kb on + strand, within MMP_RS04500at 856.745 kb on + strand, within MMP_RS04500at 856.763 kb on + strand, within MMP_RS04500at 856.763 kb on + strand, within MMP_RS04500at 856.771 kb on - strand, within MMP_RS04500at 856.840 kb on - strand, within MMP_RS04500at 856.841 kb on + strand, within MMP_RS04500at 856.842 kb on - strand, within MMP_RS04500at 856.843 kb on + strand, within MMP_RS04500at 856.843 kb on + strand, within MMP_RS04500at 856.843 kb on + strand, within MMP_RS04500at 856.843 kb on + strand, within MMP_RS04500at 856.843 kb on + strand, within MMP_RS04500at 856.845 kb on - strand, within MMP_RS04500at 856.845 kb on - strand, within MMP_RS04500at 856.905 kb on - strand, within MMP_RS04500at 856.906 kb on + strand, within MMP_RS04500at 856.933 kb on - strand, within MMP_RS04500at 856.933 kb on - strand, within MMP_RS04500at 856.949 kb on + strand, within MMP_RS04500at 856.963 kb on + strand, within MMP_RS04500at 857.048 kb on - strand, within MMP_RS04500at 857.066 kb on - strand, within MMP_RS04500at 857.199 kb on - strand, within MMP_RS04500at 857.200 kb on + strand, within MMP_RS04500at 857.226 kb on + strand, within MMP_RS04500at 857.329 kb on - strand, within MMP_RS04500at 857.383 kb on - strand, within MMP_RS04500at 857.466 kb on - strand, within MMP_RS04500at 857.519 kb on + strandat 857.540 kb on - strandat 857.541 kb on + strandat 857.556 kb on - strandat 857.665 kb on - strandat 857.680 kb on - strandat 857.680 kb on - strandat 857.709 kb on - strandat 857.712 kb on + strandat 857.712 kb on + strandat 857.798 kb on + strandat 857.823 kb on - strandat 857.890 kb on - strand, within MMP_RS04505at 857.890 kb on - strand, within MMP_RS04505at 857.897 kb on + strand, within MMP_RS04505at 857.951 kb on + strand, within MMP_RS04505at 857.953 kb on + strand, within MMP_RS04505at 857.996 kb on + strand, within MMP_RS04505at 857.997 kb on - strand, within MMP_RS04505at 857.997 kb on - strand, within MMP_RS04505at 857.997 kb on - strand, within MMP_RS04505at 858.018 kb on - strand, within MMP_RS04505at 858.019 kb on + strand, within MMP_RS04505at 858.090 kb on - strand, within MMP_RS04505at 858.091 kb on + strand, within MMP_RS04505at 858.091 kb on + strand, within MMP_RS04505at 858.147 kb on + strand, within MMP_RS04505at 858.213 kb on + strand, within MMP_RS04505at 858.291 kb on - strand, within MMP_RS04505at 858.304 kb on - strand, within MMP_RS04505at 858.304 kb on - strand, within MMP_RS04505at 858.304 kb on - strand, within MMP_RS04505at 858.304 kb on - strand, within MMP_RS04505at 858.304 kb on - strand, within MMP_RS04505at 858.304 kb on - strand, within MMP_RS04505at 858.308 kb on - strand, within MMP_RS04505at 858.308 kb on - strand, within MMP_RS04505at 858.308 kb on - strand, within MMP_RS04505at 858.308 kb on - strand, within MMP_RS04505at 858.308 kb on - strand, within MMP_RS04505at 858.308 kb on - strand, within MMP_RS04505at 858.308 kb on - strand, within MMP_RS04505at 858.309 kb on + strand, within MMP_RS04505at 858.309 kb on + strand, within MMP_RS04505at 858.309 kb on + strand, within MMP_RS04505at 858.309 kb on + strand, within MMP_RS04505at 858.310 kb on - strand, within MMP_RS04505at 858.311 kb on + strand, within MMP_RS04505at 858.314 kb on - strand, within MMP_RS04505at 858.351 kb on - strand, within MMP_RS04505at 858.351 kb on - strand, within MMP_RS04505at 858.352 kb on + strand, within MMP_RS04505at 858.352 kb on + strand, within MMP_RS04505at 858.429 kb on - strand, within MMP_RS04505at 858.464 kb on - strand, within MMP_RS04505at 858.464 kb on - strand, within MMP_RS04505at 858.540 kb on + strand, within MMP_RS04505at 858.546 kb on + strand, within MMP_RS04505at 858.546 kb on + strand, within MMP_RS04505

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate deepwell autotrophic conditions
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855,230 - MMP_RS04495 0.20 -0.4
855,262 + MMP_RS04495 0.23 -0.2
855,540 + MMP_RS04495 0.46 -0.1
855,548 - MMP_RS04495 0.47 +0.0
855,586 - MMP_RS04495 0.50 +0.9
855,825 + MMP_RS04495 0.71 +0.2
855,835 - MMP_RS04495 0.72 -0.6
855,857 - MMP_RS04495 0.74 -0.2
855,857 - MMP_RS04495 0.74 +0.4
855,887 - MMP_RS04495 0.76 -0.5
855,888 + MMP_RS04495 0.76 +0.2
855,888 + MMP_RS04495 0.76 -0.3
855,888 + MMP_RS04495 0.76 -0.1
855,911 - MMP_RS04495 0.78 +0.3
856,023 + MMP_RS04495 0.88 -0.2
856,114 + +0.5
856,128 - +0.5
856,128 - -0.0
856,129 + +0.3
856,130 - +0.4
856,131 + +0.0
856,166 + -0.1
856,167 - +0.2
856,167 - -0.2
856,167 - -0.9
856,168 + -0.0
856,168 + +0.3
856,168 + -0.7
856,168 + +0.5
856,170 - +0.6
856,170 - +0.1
856,171 + -0.0
856,171 + +0.1
856,173 + -0.2
856,173 + -0.1
856,241 + -2.8
856,350 + -2.1
856,397 - MMP_RS04500 0.12 -1.0
856,401 - MMP_RS04500 0.13 -2.5
856,402 + MMP_RS04500 0.13 -2.3
856,457 - MMP_RS04500 0.17 -2.1
856,540 - MMP_RS04500 0.23 -1.3
856,600 - MMP_RS04500 0.27 -1.6
856,600 - MMP_RS04500 0.27 -1.7
856,677 + MMP_RS04500 0.32 -1.7
856,678 - MMP_RS04500 0.32 -2.2
856,726 + MMP_RS04500 0.36 -2.1
856,745 + MMP_RS04500 0.37 -1.2
856,763 + MMP_RS04500 0.39 -2.1
856,763 + MMP_RS04500 0.39 -1.1
856,771 - MMP_RS04500 0.39 -2.7
856,840 - MMP_RS04500 0.44 -2.0
856,841 + MMP_RS04500 0.44 +0.7
856,842 - MMP_RS04500 0.44 -1.3
856,843 + MMP_RS04500 0.44 -1.4
856,843 + MMP_RS04500 0.44 -2.1
856,843 + MMP_RS04500 0.44 -1.6
856,843 + MMP_RS04500 0.44 -1.5
856,843 + MMP_RS04500 0.44 -1.0
856,845 - MMP_RS04500 0.44 -1.9
856,845 - MMP_RS04500 0.44 -2.4
856,905 - MMP_RS04500 0.49 -1.8
856,906 + MMP_RS04500 0.49 -2.0
856,933 - MMP_RS04500 0.51 -2.1
856,933 - MMP_RS04500 0.51 -1.7
856,949 + MMP_RS04500 0.52 -2.1
856,963 + MMP_RS04500 0.53 -2.1
857,048 - MMP_RS04500 0.59 -2.0
857,066 - MMP_RS04500 0.60 -1.7
857,199 - MMP_RS04500 0.70 -1.9
857,200 + MMP_RS04500 0.70 -2.3
857,226 + MMP_RS04500 0.72 -2.3
857,329 - MMP_RS04500 0.79 -2.0
857,383 - MMP_RS04500 0.83 -1.0
857,466 - MMP_RS04500 0.89 -1.8
857,519 + -2.2
857,540 - -2.6
857,541 + -1.7
857,556 - -2.1
857,665 - +0.5
857,680 - +0.4
857,680 - +0.4
857,709 - +0.5
857,712 + -0.4
857,712 + -0.6
857,798 + -0.8
857,823 - -0.0
857,890 - MMP_RS04505 0.11 +0.7
857,890 - MMP_RS04505 0.11 -0.0
857,897 + MMP_RS04505 0.11 -0.2
857,951 + MMP_RS04505 0.17 -0.1
857,953 + MMP_RS04505 0.18 +0.0
857,996 + MMP_RS04505 0.23 +0.4
857,997 - MMP_RS04505 0.23 +0.6
857,997 - MMP_RS04505 0.23 -0.3
857,997 - MMP_RS04505 0.23 -0.1
858,018 - MMP_RS04505 0.25 -0.3
858,019 + MMP_RS04505 0.25 -0.2
858,090 - MMP_RS04505 0.33 +0.1
858,091 + MMP_RS04505 0.33 +0.5
858,091 + MMP_RS04505 0.33 +0.1
858,147 + MMP_RS04505 0.40 -0.3
858,213 + MMP_RS04505 0.47 -0.4
858,291 - MMP_RS04505 0.56 +0.0
858,304 - MMP_RS04505 0.57 -0.0
858,304 - MMP_RS04505 0.57 -0.2
858,304 - MMP_RS04505 0.57 -0.2
858,304 - MMP_RS04505 0.57 +0.0
858,304 - MMP_RS04505 0.57 -0.1
858,304 - MMP_RS04505 0.57 +0.2
858,308 - MMP_RS04505 0.58 +0.1
858,308 - MMP_RS04505 0.58 +0.2
858,308 - MMP_RS04505 0.58 +0.1
858,308 - MMP_RS04505 0.58 +0.9
858,308 - MMP_RS04505 0.58 -0.5
858,308 - MMP_RS04505 0.58 +1.1
858,308 - MMP_RS04505 0.58 +0.1
858,309 + MMP_RS04505 0.58 +0.0
858,309 + MMP_RS04505 0.58 +0.7
858,309 + MMP_RS04505 0.58 +0.3
858,309 + MMP_RS04505 0.58 +0.8
858,310 - MMP_RS04505 0.58 +0.2
858,311 + MMP_RS04505 0.58 -0.2
858,314 - MMP_RS04505 0.58 +0.1
858,351 - MMP_RS04505 0.62 +0.2
858,351 - MMP_RS04505 0.62 +0.2
858,352 + MMP_RS04505 0.63 -0.0
858,352 + MMP_RS04505 0.63 -0.0
858,429 - MMP_RS04505 0.71 +0.3
858,464 - MMP_RS04505 0.75 -0.6
858,464 - MMP_RS04505 0.75 -0.2
858,540 + MMP_RS04505 0.84 +0.0
858,546 + MMP_RS04505 0.84 +0.1
858,546 + MMP_RS04505 0.84 -0.2

Or see this region's nucleotide sequence