Experiment: Formate deepwell autotrophic conditions
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03240 and MMP_RS03245 are separated by 46 nucleotides MMP_RS03245 and MMP_RS03250 are separated by 105 nucleotides MMP_RS03250 and MMP_RS03255 are separated by 10 nucleotides MMP_RS03255 and MMP_RS03260 are separated by 22 nucleotides
MMP_RS03240: MMP_RS03240 - tRNA(Ile)(2)-agmatinylcytidine synthase, at 611,386 to 612,660
_RS03240
MMP_RS03245: MMP_RS03245 - DNA repair and recombination protein RadB, at 612,707 to 613,357
_RS03245
MMP_RS03250: MMP_RS03250 - MJ1244 family protein, at 613,463 to 613,792
_RS03250
MMP_RS03255: MMP_RS03255 - DUF134 domain-containing protein, at 613,803 to 614,198
_RS03255
MMP_RS03260: MMP_RS03260 - methyl coenzyme M reductase system component A2, at 614,221 to 615,816
_RS03260
Position (kb) 613
614 Strain fitness (log2 ratio) -2
-1
0
1 at 612.681 kb on + strand at 612.706 kb on - strand at 612.734 kb on + strand at 612.790 kb on - strand, within MMP_RS03245 at 613.003 kb on - strand, within MMP_RS03245 at 613.066 kb on - strand, within MMP_RS03245 at 613.250 kb on + strand, within MMP_RS03245 at 613.253 kb on + strand, within MMP_RS03245 at 613.376 kb on - strand at 613.405 kb on - strand at 613.409 kb on - strand at 613.410 kb on + strand at 613.428 kb on + strand at 613.428 kb on + strand at 613.702 kb on + strand, within MMP_RS03250 at 613.740 kb on + strand, within MMP_RS03250 at 613.741 kb on - strand, within MMP_RS03250 at 613.742 kb on + strand, within MMP_RS03250 at 614.274 kb on + strand at 614.286 kb on + strand at 614.533 kb on + strand at 614.537 kb on + strand at 614.537 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate deepwell autotrophic conditions remove 612,681 + +0.0 612,706 - +0.4 612,734 + +0.2 612,790 - MMP_RS03245 0.13 -0.0 613,003 - MMP_RS03245 0.45 +0.1 613,066 - MMP_RS03245 0.55 +0.2 613,250 + MMP_RS03245 0.83 +0.9 613,253 + MMP_RS03245 0.84 +0.1 613,376 - +0.2 613,405 - -0.2 613,409 - -0.5 613,410 + -0.5 613,428 + -0.3 613,428 + -0.2 613,702 + MMP_RS03250 0.72 -0.2 613,740 + MMP_RS03250 0.84 -0.7 613,741 - MMP_RS03250 0.84 -2.5 613,742 + MMP_RS03250 0.85 -1.5 614,274 + -1.6 614,286 + -0.8 614,533 + -2.1 614,537 + -0.6 614,537 + -2.4
Or see this region's nucleotide sequence