Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06575

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06574 and H281DRAFT_06575 are separated by 296 nucleotidesH281DRAFT_06575 and H281DRAFT_06576 overlap by 8 nucleotidesH281DRAFT_06576 and H281DRAFT_06577 overlap by 30 nucleotidesH281DRAFT_06577 and H281DRAFT_06578 are separated by 174 nucleotides H281DRAFT_06574: H281DRAFT_06574 - PAS/PAC sensor hybrid histidine kinase (EC 2.7.13.3), at 14,781 to 16,310 _06574 H281DRAFT_06575: H281DRAFT_06575 - PAS domain S-box-containing protein, at 16,607 to 18,796 _06575 H281DRAFT_06576: H281DRAFT_06576 - CheY chemotaxis protein or a CheY-like REC (receiver) domain, at 18,789 to 19,160 _06576 H281DRAFT_06577: H281DRAFT_06577 - hypothetical protein, at 19,131 to 19,541 _06577 H281DRAFT_06578: H281DRAFT_06578 - NADP-dependent 3-hydroxy acid dehydrogenase YdfG, at 19,716 to 20,573 _06578 Position (kb) 16 17 18 19Strain fitness (log2 ratio) -2 -1 0 1at 15.653 kb on + strand, within H281DRAFT_06574at 15.653 kb on + strand, within H281DRAFT_06574at 15.738 kb on - strand, within H281DRAFT_06574at 15.738 kb on - strand, within H281DRAFT_06574at 15.829 kb on - strand, within H281DRAFT_06574at 15.903 kb on + strand, within H281DRAFT_06574at 16.115 kb on + strand, within H281DRAFT_06574at 16.115 kb on + strand, within H281DRAFT_06574at 16.196 kb on + strandat 16.197 kb on - strandat 16.197 kb on - strandat 16.197 kb on - strandat 16.197 kb on - strandat 16.351 kb on - strandat 16.351 kb on - strandat 16.515 kb on + strandat 16.516 kb on - strandat 16.537 kb on - strandat 16.537 kb on - strandat 16.557 kb on + strandat 16.558 kb on - strandat 16.970 kb on - strand, within H281DRAFT_06575at 16.970 kb on - strand, within H281DRAFT_06575at 16.970 kb on - strand, within H281DRAFT_06575at 17.107 kb on + strand, within H281DRAFT_06575at 17.108 kb on - strand, within H281DRAFT_06575at 17.171 kb on - strand, within H281DRAFT_06575at 17.183 kb on + strand, within H281DRAFT_06575at 17.184 kb on - strand, within H281DRAFT_06575at 17.242 kb on - strand, within H281DRAFT_06575at 17.242 kb on - strand, within H281DRAFT_06575at 17.363 kb on - strand, within H281DRAFT_06575at 17.363 kb on - strand, within H281DRAFT_06575at 17.450 kb on + strand, within H281DRAFT_06575at 17.451 kb on - strand, within H281DRAFT_06575at 17.576 kb on + strand, within H281DRAFT_06575at 17.576 kb on + strand, within H281DRAFT_06575at 17.576 kb on + strand, within H281DRAFT_06575at 17.615 kb on + strand, within H281DRAFT_06575at 17.615 kb on + strand, within H281DRAFT_06575at 17.615 kb on + strand, within H281DRAFT_06575at 17.616 kb on - strand, within H281DRAFT_06575at 17.616 kb on - strand, within H281DRAFT_06575at 17.616 kb on - strand, within H281DRAFT_06575at 17.628 kb on + strand, within H281DRAFT_06575at 17.648 kb on + strand, within H281DRAFT_06575at 17.648 kb on + strand, within H281DRAFT_06575at 17.649 kb on - strand, within H281DRAFT_06575at 17.693 kb on + strand, within H281DRAFT_06575at 17.694 kb on - strand, within H281DRAFT_06575at 17.694 kb on - strand, within H281DRAFT_06575at 17.855 kb on + strand, within H281DRAFT_06575at 17.882 kb on - strand, within H281DRAFT_06575at 17.882 kb on - strand, within H281DRAFT_06575at 17.888 kb on + strand, within H281DRAFT_06575at 18.100 kb on + strand, within H281DRAFT_06575at 18.100 kb on + strand, within H281DRAFT_06575at 18.100 kb on + strand, within H281DRAFT_06575at 18.101 kb on - strand, within H281DRAFT_06575at 18.400 kb on + strand, within H281DRAFT_06575at 18.401 kb on - strand, within H281DRAFT_06575at 18.413 kb on - strand, within H281DRAFT_06575at 18.413 kb on - strand, within H281DRAFT_06575at 18.527 kb on + strand, within H281DRAFT_06575at 18.527 kb on + strand, within H281DRAFT_06575at 18.598 kb on + strandat 18.607 kb on + strandat 18.607 kb on + strandat 18.608 kb on - strandat 18.608 kb on - strandat 18.609 kb on + strandat 18.610 kb on - strandat 18.691 kb on - strandat 18.691 kb on - strandat 18.691 kb on - strandat 18.788 kb on + strandat 18.789 kb on - strandat 18.933 kb on - strand, within H281DRAFT_06576at 19.044 kb on + strand, within H281DRAFT_06576at 19.045 kb on - strand, within H281DRAFT_06576at 19.045 kb on - strand, within H281DRAFT_06576at 19.117 kb on + strandat 19.145 kb on + strandat 19.145 kb on + strandat 19.146 kb on - strandat 19.159 kb on - strandat 19.339 kb on + strand, within H281DRAFT_06577at 19.340 kb on - strand, within H281DRAFT_06577at 19.340 kb on - strand, within H281DRAFT_06577at 19.436 kb on - strand, within H281DRAFT_06577at 19.436 kb on - strand, within H281DRAFT_06577at 19.483 kb on + strand, within H281DRAFT_06577at 19.483 kb on + strand, within H281DRAFT_06577at 19.483 kb on + strand, within H281DRAFT_06577at 19.484 kb on - strand, within H281DRAFT_06577at 19.484 kb on - strand, within H281DRAFT_06577at 19.484 kb on - strand, within H281DRAFT_06577at 19.542 kb on - strandat 19.638 kb on - strandat 19.721 kb on + strandat 19.721 kb on + strandat 19.722 kb on - strandat 19.758 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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15,653 + H281DRAFT_06574 0.57 -1.0
15,653 + H281DRAFT_06574 0.57 +0.0
15,738 - H281DRAFT_06574 0.63 +1.5
15,738 - H281DRAFT_06574 0.63 -0.4
15,829 - H281DRAFT_06574 0.68 -0.5
15,903 + H281DRAFT_06574 0.73 -0.5
16,115 + H281DRAFT_06574 0.87 +0.6
16,115 + H281DRAFT_06574 0.87 -0.5
16,196 + -0.5
16,197 - -0.4
16,197 - -1.0
16,197 - +0.6
16,197 - +0.5
16,351 - -0.5
16,351 - +0.5
16,515 + -0.5
16,516 - +0.2
16,537 - +0.2
16,537 - -0.0
16,557 + +0.2
16,558 - +1.3
16,970 - H281DRAFT_06575 0.17 -0.2
16,970 - H281DRAFT_06575 0.17 +1.2
16,970 - H281DRAFT_06575 0.17 -0.9
17,107 + H281DRAFT_06575 0.23 +0.5
17,108 - H281DRAFT_06575 0.23 +0.1
17,171 - H281DRAFT_06575 0.26 +0.9
17,183 + H281DRAFT_06575 0.26 -0.1
17,184 - H281DRAFT_06575 0.26 +1.1
17,242 - H281DRAFT_06575 0.29 +0.2
17,242 - H281DRAFT_06575 0.29 +0.9
17,363 - H281DRAFT_06575 0.35 +0.1
17,363 - H281DRAFT_06575 0.35 +0.2
17,450 + H281DRAFT_06575 0.38 +0.2
17,451 - H281DRAFT_06575 0.39 +0.9
17,576 + H281DRAFT_06575 0.44 -0.9
17,576 + H281DRAFT_06575 0.44 +0.6
17,576 + H281DRAFT_06575 0.44 -2.1
17,615 + H281DRAFT_06575 0.46 +0.2
17,615 + H281DRAFT_06575 0.46 -0.1
17,615 + H281DRAFT_06575 0.46 -0.0
17,616 - H281DRAFT_06575 0.46 +0.5
17,616 - H281DRAFT_06575 0.46 +0.5
17,616 - H281DRAFT_06575 0.46 +0.6
17,628 + H281DRAFT_06575 0.47 -0.1
17,648 + H281DRAFT_06575 0.48 +0.5
17,648 + H281DRAFT_06575 0.48 +0.2
17,649 - H281DRAFT_06575 0.48 +0.3
17,693 + H281DRAFT_06575 0.50 +0.0
17,694 - H281DRAFT_06575 0.50 +0.5
17,694 - H281DRAFT_06575 0.50 -1.2
17,855 + H281DRAFT_06575 0.57 +1.1
17,882 - H281DRAFT_06575 0.58 +0.3
17,882 - H281DRAFT_06575 0.58 -0.1
17,888 + H281DRAFT_06575 0.58 -0.0
18,100 + H281DRAFT_06575 0.68 -0.5
18,100 + H281DRAFT_06575 0.68 -0.9
18,100 + H281DRAFT_06575 0.68 +0.3
18,101 - H281DRAFT_06575 0.68 +0.0
18,400 + H281DRAFT_06575 0.82 +0.6
18,401 - H281DRAFT_06575 0.82 +0.7
18,413 - H281DRAFT_06575 0.82 +0.3
18,413 - H281DRAFT_06575 0.82 +0.6
18,527 + H281DRAFT_06575 0.88 +0.4
18,527 + H281DRAFT_06575 0.88 +0.3
18,598 + +1.0
18,607 + +0.9
18,607 + +0.2
18,608 - -0.2
18,608 - +0.4
18,609 + -0.8
18,610 - +0.8
18,691 - -0.4
18,691 - +0.3
18,691 - -1.7
18,788 + -0.9
18,789 - -1.1
18,933 - H281DRAFT_06576 0.39 +1.7
19,044 + H281DRAFT_06576 0.69 -0.3
19,045 - H281DRAFT_06576 0.69 +0.8
19,045 - H281DRAFT_06576 0.69 +1.5
19,117 + -0.2
19,145 + +0.5
19,145 + +0.2
19,146 - +0.8
19,159 - -1.1
19,339 + H281DRAFT_06577 0.51 +0.5
19,340 - H281DRAFT_06577 0.51 -0.5
19,340 - H281DRAFT_06577 0.51 +0.9
19,436 - H281DRAFT_06577 0.74 +1.3
19,436 - H281DRAFT_06577 0.74 +0.9
19,483 + H281DRAFT_06577 0.86 +1.4
19,483 + H281DRAFT_06577 0.86 +0.3
19,483 + H281DRAFT_06577 0.86 +0.9
19,484 - H281DRAFT_06577 0.86 +0.2
19,484 - H281DRAFT_06577 0.86 +0.6
19,484 - H281DRAFT_06577 0.86 +0.5
19,542 - +0.7
19,638 - -0.2
19,721 + +0.7
19,721 + +0.5
19,722 - +1.1
19,758 - -0.2

Or see this region's nucleotide sequence