Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06502

Experiment: 2'-Deoxyinosine 5 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_06501 and H281DRAFT_06502 are separated by 45 nucleotidesH281DRAFT_06502 and H281DRAFT_06503 are separated by 16 nucleotides H281DRAFT_06501: H281DRAFT_06501 - N-ethylmaleimide reductase, at 48,150 to 49,289 _06501 H281DRAFT_06502: H281DRAFT_06502 - transcriptional regulator, LysR family, at 49,335 to 50,270 _06502 H281DRAFT_06503: H281DRAFT_06503 - LysR family transcriptional regulator, hca operon transcriptional activator, at 50,287 to 51,171 _06503 Position (kb) 49 50 51Strain fitness (log2 ratio) -1 0 1 2at 48.373 kb on - strand, within H281DRAFT_06501at 48.440 kb on - strand, within H281DRAFT_06501at 48.891 kb on + strand, within H281DRAFT_06501at 48.892 kb on - strand, within H281DRAFT_06501at 49.173 kb on + strand, within H281DRAFT_06501at 49.173 kb on + strand, within H281DRAFT_06501at 49.230 kb on + strandat 49.259 kb on + strandat 49.875 kb on + strand, within H281DRAFT_06502at 49.877 kb on + strand, within H281DRAFT_06502at 49.972 kb on - strand, within H281DRAFT_06502at 49.972 kb on - strand, within H281DRAFT_06502

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
remove
48,373 - H281DRAFT_06501 0.20 -0.4
48,440 - H281DRAFT_06501 0.25 +0.4
48,891 + H281DRAFT_06501 0.65 +0.3
48,892 - H281DRAFT_06501 0.65 -0.2
49,173 + H281DRAFT_06501 0.90 -0.3
49,173 + H281DRAFT_06501 0.90 +0.6
49,230 + +0.3
49,259 + -0.5
49,875 + H281DRAFT_06502 0.58 -0.6
49,877 + H281DRAFT_06502 0.58 +1.9
49,972 - H281DRAFT_06502 0.68 +1.4
49,972 - H281DRAFT_06502 0.68 +0.3

Or see this region's nucleotide sequence