Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06483

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06482 and H281DRAFT_06483 overlap by 17 nucleotidesH281DRAFT_06483 and H281DRAFT_06484 are separated by 279 nucleotides H281DRAFT_06482: H281DRAFT_06482 - succinylarginine dihydrolase, at 19,748 to 21,088 _06482 H281DRAFT_06483: H281DRAFT_06483 - succinylglutamate desuccinylase, at 21,072 to 22,124 _06483 H281DRAFT_06484: H281DRAFT_06484 - amino acid ABC transporter substrate-binding protein, PAAT family, at 22,404 to 23,204 _06484 Position (kb) 21 22 23Strain fitness (log2 ratio) -2 -1 0 1at 21.130 kb on - strandat 21.475 kb on - strand, within H281DRAFT_06483at 21.707 kb on + strand, within H281DRAFT_06483at 21.707 kb on + strand, within H281DRAFT_06483at 21.708 kb on - strand, within H281DRAFT_06483at 22.122 kb on + strandat 22.162 kb on + strandat 22.389 kb on - strandat 22.860 kb on + strand, within H281DRAFT_06484at 22.860 kb on + strand, within H281DRAFT_06484

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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21,130 - -0.4
21,475 - H281DRAFT_06483 0.38 -2.6
21,707 + H281DRAFT_06483 0.60 -2.0
21,707 + H281DRAFT_06483 0.60 -1.8
21,708 - H281DRAFT_06483 0.60 -0.6
22,122 + +0.4
22,162 + -0.2
22,389 - +0.6
22,860 + H281DRAFT_06484 0.57 +0.3
22,860 + H281DRAFT_06484 0.57 -0.4

Or see this region's nucleotide sequence