Experiment: 2'-Deoxyinosine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06161 and H281DRAFT_06162 are separated by 8 nucleotides H281DRAFT_06162 and H281DRAFT_06163 overlap by 44 nucleotides H281DRAFT_06163 and H281DRAFT_06164 overlap by 11 nucleotides H281DRAFT_06164 and H281DRAFT_06165 are separated by 356 nucleotides
H281DRAFT_06161: H281DRAFT_06161 - conjugative coupling factor TraD, SXT/TOL subfamily, at 53,749 to 55,992
_06161
H281DRAFT_06162: H281DRAFT_06162 - hypothetical protein, at 56,001 to 56,519
_06162
H281DRAFT_06163: H281DRAFT_06163 - hypothetical protein, at 56,476 to 56,760
_06163
H281DRAFT_06164: H281DRAFT_06164 - protein of unknown function (DUF4400), at 56,750 to 57,355
_06164
H281DRAFT_06165: H281DRAFT_06165 - hypothetical protein, at 57,712 to 58,581
_06165
Position (kb) 56
57
58 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 55.869 kb on - strand at 55.908 kb on - strand at 55.908 kb on - strand at 55.911 kb on + strand at 55.911 kb on + strand at 55.911 kb on + strand at 55.912 kb on - strand at 55.912 kb on - strand at 55.912 kb on - strand at 55.912 kb on - strand at 55.931 kb on - strand at 56.472 kb on + strand at 56.472 kb on + strand at 56.472 kb on + strand at 56.473 kb on - strand at 56.473 kb on - strand at 56.473 kb on - strand at 56.473 kb on - strand at 56.698 kb on + strand, within H281DRAFT_06163 at 56.749 kb on + strand at 56.749 kb on + strand at 56.749 kb on + strand at 56.750 kb on - strand at 56.750 kb on - strand at 56.769 kb on + strand at 56.779 kb on - strand at 56.779 kb on - strand at 56.889 kb on + strand, within H281DRAFT_06164 at 56.892 kb on + strand, within H281DRAFT_06164 at 56.892 kb on + strand, within H281DRAFT_06164 at 56.892 kb on + strand, within H281DRAFT_06164 at 57.348 kb on - strand at 57.348 kb on - strand at 57.353 kb on + strand at 57.353 kb on + strand at 57.372 kb on + strand at 57.373 kb on - strand at 57.386 kb on + strand at 57.400 kb on - strand at 57.400 kb on - strand at 57.400 kb on - strand at 57.489 kb on + strand at 57.663 kb on + strand at 57.664 kb on - strand at 57.664 kb on - strand at 57.664 kb on - strand at 57.695 kb on + strand at 57.695 kb on + strand at 57.696 kb on - strand at 57.711 kb on + strand at 57.712 kb on - strand at 58.096 kb on - strand, within H281DRAFT_06165
Per-strain Table
Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C) remove 55,869 - -0.5 55,908 - +0.6 55,908 - -0.1 55,911 + -1.5 55,911 + -0.7 55,911 + +0.5 55,912 - -0.3 55,912 - -0.4 55,912 - -0.0 55,912 - +0.4 55,931 - +0.2 56,472 + -0.7 56,472 + -0.3 56,472 + +0.4 56,473 - -0.6 56,473 - -0.5 56,473 - +3.4 56,473 - +0.5 56,698 + H281DRAFT_06163 0.78 -0.4 56,749 + -0.5 56,749 + -0.6 56,749 + +0.0 56,750 - +1.6 56,750 - -0.9 56,769 + +0.1 56,779 - +0.1 56,779 - +0.1 56,889 + H281DRAFT_06164 0.23 +0.7 56,892 + H281DRAFT_06164 0.23 -0.0 56,892 + H281DRAFT_06164 0.23 +0.4 56,892 + H281DRAFT_06164 0.23 +1.3 57,348 - -0.6 57,348 - +0.9 57,353 + +0.0 57,353 + +1.2 57,372 + +0.7 57,373 - +0.2 57,386 + -0.3 57,400 - -0.6 57,400 - +0.5 57,400 - +1.0 57,489 + +1.3 57,663 + -4.0 57,664 - -0.2 57,664 - +1.0 57,664 - +0.0 57,695 + -1.0 57,695 + +1.3 57,696 - -1.8 57,711 + +0.5 57,712 - -0.5 58,096 - H281DRAFT_06165 0.44 +0.2
Or see this region's nucleotide sequence