Experiment: 2'-Deoxyinosine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06102 and H281DRAFT_06103 are separated by 1 nucleotides H281DRAFT_06103 and H281DRAFT_06104 overlap by 4 nucleotides H281DRAFT_06104 and H281DRAFT_06105 are separated by 37 nucleotides
H281DRAFT_06102: H281DRAFT_06102 - peptide/nickel transport system permease protein, at 122,374 to 123,288
_06102
H281DRAFT_06103: H281DRAFT_06103 - peptide/nickel transport system ATP-binding protein, at 123,290 to 124,180
_06103
H281DRAFT_06104: H281DRAFT_06104 - peptide/nickel transport system ATP-binding protein, at 124,177 to 124,944
_06104
H281DRAFT_06105: H281DRAFT_06105 - transcriptional regulator, GntR family, at 124,982 to 126,085
_06105
Position (kb) 124
125 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 123.946 kb on + strand, within H281DRAFT_06103 at 123.998 kb on + strand, within H281DRAFT_06103 at 124.177 kb on - strand at 124.479 kb on - strand, within H281DRAFT_06104 at 124.483 kb on - strand, within H281DRAFT_06104 at 124.536 kb on - strand, within H281DRAFT_06104 at 124.536 kb on - strand, within H281DRAFT_06104 at 124.829 kb on + strand, within H281DRAFT_06104 at 124.905 kb on + strand at 124.983 kb on + strand at 125.001 kb on + strand at 125.005 kb on + strand at 125.005 kb on + strand at 125.219 kb on - strand, within H281DRAFT_06105 at 125.219 kb on - strand, within H281DRAFT_06105 at 125.302 kb on - strand, within H281DRAFT_06105 at 125.302 kb on - strand, within H281DRAFT_06105 at 125.423 kb on + strand, within H281DRAFT_06105 at 125.440 kb on - strand, within H281DRAFT_06105 at 125.900 kb on - strand, within H281DRAFT_06105
Per-strain Table
Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C) remove 123,946 + H281DRAFT_06103 0.74 -0.3 123,998 + H281DRAFT_06103 0.79 -0.3 124,177 - +0.4 124,479 - H281DRAFT_06104 0.39 -0.8 124,483 - H281DRAFT_06104 0.40 -0.2 124,536 - H281DRAFT_06104 0.47 +0.0 124,536 - H281DRAFT_06104 0.47 +0.7 124,829 + H281DRAFT_06104 0.85 +0.5 124,905 + +1.1 124,983 + -1.1 125,001 + -0.6 125,005 + -1.0 125,005 + -1.0 125,219 - H281DRAFT_06105 0.21 +0.4 125,219 - H281DRAFT_06105 0.21 -0.3 125,302 - H281DRAFT_06105 0.29 -1.5 125,302 - H281DRAFT_06105 0.29 -2.9 125,423 + H281DRAFT_06105 0.40 -1.2 125,440 - H281DRAFT_06105 0.41 -0.7 125,900 - H281DRAFT_06105 0.83 -1.6
Or see this region's nucleotide sequence