Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05977

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05976 and H281DRAFT_05977 are separated by 363 nucleotidesH281DRAFT_05977 and H281DRAFT_05978 are separated by 51 nucleotides H281DRAFT_05976: H281DRAFT_05976 - D-galactonate transporter, at 118,878 to 120,215 _05976 H281DRAFT_05977: H281DRAFT_05977 - Enoyl-CoA hydratase/carnithine racemase, at 120,579 to 121,343 _05977 H281DRAFT_05978: H281DRAFT_05978 - Sugar lactone lactonase YvrE, at 121,395 to 122,306 _05978 Position (kb) 120 121 122Strain fitness (log2 ratio) -1 0 1at 119.841 kb on + strand, within H281DRAFT_05976at 119.842 kb on - strand, within H281DRAFT_05976at 119.846 kb on - strand, within H281DRAFT_05976at 119.925 kb on - strand, within H281DRAFT_05976at 120.082 kb on + strandat 120.858 kb on + strand, within H281DRAFT_05977at 121.432 kb on + strandat 121.908 kb on + strand, within H281DRAFT_05978at 121.908 kb on + strand, within H281DRAFT_05978at 121.909 kb on - strand, within H281DRAFT_05978at 121.974 kb on + strand, within H281DRAFT_05978at 122.261 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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119,841 + H281DRAFT_05976 0.72 +0.6
119,842 - H281DRAFT_05976 0.72 +0.4
119,846 - H281DRAFT_05976 0.72 -0.2
119,925 - H281DRAFT_05976 0.78 +1.0
120,082 + +0.8
120,858 + H281DRAFT_05977 0.36 +0.9
121,432 + +0.2
121,908 + H281DRAFT_05978 0.56 -0.6
121,908 + H281DRAFT_05978 0.56 -0.2
121,909 - H281DRAFT_05978 0.56 +1.0
121,974 + H281DRAFT_05978 0.63 +0.8
122,261 - +0.1

Or see this region's nucleotide sequence