Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05813

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05812 and H281DRAFT_05813 overlap by 4 nucleotidesH281DRAFT_05813 and H281DRAFT_05814 are separated by 201 nucleotidesH281DRAFT_05814 and H281DRAFT_05815 are separated by 97 nucleotides H281DRAFT_05812: H281DRAFT_05812 - biotin-dependent carboxylase uncharacterized domain-containing protein, at 89,102 to 90,154 _05812 H281DRAFT_05813: H281DRAFT_05813 - sensor histidine kinase inhibitor, KipI family, at 90,151 to 90,804 _05813 H281DRAFT_05814: H281DRAFT_05814 - Predicted transcription regulator, contains HTH domain, MarR family, at 91,006 to 91,518 _05814 H281DRAFT_05815: H281DRAFT_05815 - 5,10-methenyltetrahydrofolate synthetase, at 91,616 to 92,158 _05815 Position (kb) 90 91Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 89.153 kb on + strandat 89.154 kb on - strandat 89.178 kb on + strandat 89.179 kb on - strandat 89.214 kb on + strand, within H281DRAFT_05812at 89.474 kb on + strand, within H281DRAFT_05812at 89.527 kb on - strand, within H281DRAFT_05812at 89.793 kb on - strand, within H281DRAFT_05812at 89.793 kb on - strand, within H281DRAFT_05812at 90.160 kb on + strandat 90.160 kb on + strandat 90.288 kb on - strand, within H281DRAFT_05813at 90.390 kb on + strand, within H281DRAFT_05813at 90.391 kb on - strand, within H281DRAFT_05813at 90.391 kb on - strand, within H281DRAFT_05813at 90.391 kb on - strand, within H281DRAFT_05813at 90.392 kb on + strand, within H281DRAFT_05813at 90.392 kb on + strand, within H281DRAFT_05813at 90.392 kb on + strand, within H281DRAFT_05813at 90.393 kb on - strand, within H281DRAFT_05813at 90.393 kb on - strand, within H281DRAFT_05813at 90.393 kb on - strand, within H281DRAFT_05813at 90.431 kb on + strand, within H281DRAFT_05813at 90.431 kb on + strand, within H281DRAFT_05813at 90.432 kb on - strand, within H281DRAFT_05813at 90.432 kb on - strand, within H281DRAFT_05813at 90.432 kb on - strand, within H281DRAFT_05813at 90.525 kb on - strand, within H281DRAFT_05813at 90.890 kb on - strandat 90.890 kb on - strandat 90.890 kb on - strandat 90.890 kb on - strandat 90.905 kb on + strandat 90.906 kb on - strandat 90.923 kb on - strandat 90.923 kb on - strandat 90.963 kb on + strandat 91.247 kb on + strand, within H281DRAFT_05814at 91.247 kb on + strand, within H281DRAFT_05814at 91.247 kb on + strand, within H281DRAFT_05814at 91.247 kb on + strand, within H281DRAFT_05814at 91.247 kb on + strand, within H281DRAFT_05814at 91.248 kb on - strand, within H281DRAFT_05814at 91.248 kb on - strand, within H281DRAFT_05814at 91.248 kb on - strand, within H281DRAFT_05814at 91.248 kb on - strand, within H281DRAFT_05814at 91.248 kb on - strand, within H281DRAFT_05814at 91.248 kb on - strand, within H281DRAFT_05814at 91.254 kb on + strand, within H281DRAFT_05814at 91.254 kb on + strandat 91.255 kb on - strand, within H281DRAFT_05814at 91.255 kb on - strand, within H281DRAFT_05814at 91.270 kb on + strand, within H281DRAFT_05814at 91.270 kb on + strand, within H281DRAFT_05814at 91.290 kb on - strand, within H281DRAFT_05814at 91.290 kb on - strand, within H281DRAFT_05814at 91.294 kb on - strand, within H281DRAFT_05814at 91.301 kb on - strand, within H281DRAFT_05814at 91.305 kb on - strand, within H281DRAFT_05814at 91.305 kb on - strand, within H281DRAFT_05814at 91.305 kb on - strand, within H281DRAFT_05814at 91.483 kb on + strandat 91.483 kb on + strandat 91.483 kb on + strandat 91.483 kb on + strandat 91.483 kb on + strandat 91.483 kb on + strandat 91.484 kb on - strandat 91.484 kb on - strandat 91.484 kb on - strandat 91.484 kb on - strandat 91.515 kb on - strandat 91.517 kb on - strandat 91.517 kb on - strandat 91.569 kb on + strandat 91.570 kb on - strandat 91.570 kb on - strandat 91.618 kb on - strandat 91.679 kb on + strand, within H281DRAFT_05815at 91.679 kb on + strand, within H281DRAFT_05815at 91.680 kb on - strand, within H281DRAFT_05815at 91.680 kb on - strand, within H281DRAFT_05815at 91.717 kb on - strand, within H281DRAFT_05815

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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89,153 + +0.8
89,154 - -0.1
89,178 + +0.2
89,179 - -0.0
89,214 + H281DRAFT_05812 0.11 -0.7
89,474 + H281DRAFT_05812 0.35 +0.4
89,527 - H281DRAFT_05812 0.40 +1.1
89,793 - H281DRAFT_05812 0.66 -0.9
89,793 - H281DRAFT_05812 0.66 +0.2
90,160 + +0.4
90,160 + +1.4
90,288 - H281DRAFT_05813 0.21 +0.3
90,390 + H281DRAFT_05813 0.37 +0.2
90,391 - H281DRAFT_05813 0.37 +1.0
90,391 - H281DRAFT_05813 0.37 -1.1
90,391 - H281DRAFT_05813 0.37 +2.3
90,392 + H281DRAFT_05813 0.37 +2.9
90,392 + H281DRAFT_05813 0.37 +0.6
90,392 + H281DRAFT_05813 0.37 -0.4
90,393 - H281DRAFT_05813 0.37 +0.4
90,393 - H281DRAFT_05813 0.37 +1.6
90,393 - H281DRAFT_05813 0.37 +0.7
90,431 + H281DRAFT_05813 0.43 +1.3
90,431 + H281DRAFT_05813 0.43 +1.0
90,432 - H281DRAFT_05813 0.43 +1.3
90,432 - H281DRAFT_05813 0.43 -0.8
90,432 - H281DRAFT_05813 0.43 +1.0
90,525 - H281DRAFT_05813 0.57 +0.6
90,890 - -0.9
90,890 - +0.7
90,890 - -0.8
90,890 - -1.2
90,905 + +0.9
90,906 - -2.5
90,923 - -0.7
90,923 - -1.0
90,963 + -0.2
91,247 + H281DRAFT_05814 0.47 -1.4
91,247 + H281DRAFT_05814 0.47 -2.0
91,247 + H281DRAFT_05814 0.47 -1.8
91,247 + H281DRAFT_05814 0.47 +0.3
91,247 + H281DRAFT_05814 0.47 -0.8
91,248 - H281DRAFT_05814 0.47 -2.5
91,248 - H281DRAFT_05814 0.47 -2.5
91,248 - H281DRAFT_05814 0.47 -1.7
91,248 - H281DRAFT_05814 0.47 -0.7
91,248 - H281DRAFT_05814 0.47 -1.4
91,248 - H281DRAFT_05814 0.47 -1.5
91,254 + H281DRAFT_05814 0.48 -1.8
91,254 + -0.6
91,255 - H281DRAFT_05814 0.49 -2.3
91,255 - H281DRAFT_05814 0.49 -2.1
91,270 + H281DRAFT_05814 0.51 -1.5
91,270 + H281DRAFT_05814 0.51 -0.7
91,290 - H281DRAFT_05814 0.55 -1.0
91,290 - H281DRAFT_05814 0.55 -2.1
91,294 - H281DRAFT_05814 0.56 -2.4
91,301 - H281DRAFT_05814 0.58 -3.5
91,305 - H281DRAFT_05814 0.58 -1.3
91,305 - H281DRAFT_05814 0.58 -1.4
91,305 - H281DRAFT_05814 0.58 -3.3
91,483 + -1.3
91,483 + -4.2
91,483 + -0.6
91,483 + -1.7
91,483 + -1.4
91,483 + -0.0
91,484 - -2.0
91,484 - -1.7
91,484 - -2.6
91,484 - -1.4
91,515 - -1.0
91,517 - -1.1
91,517 - +3.0
91,569 + -0.3
91,570 - +0.5
91,570 - +0.7
91,618 - -0.3
91,679 + H281DRAFT_05815 0.12 -2.0
91,679 + H281DRAFT_05815 0.12 -2.6
91,680 - H281DRAFT_05815 0.12 -3.8
91,680 - H281DRAFT_05815 0.12 -1.8
91,717 - H281DRAFT_05815 0.19 -3.5

Or see this region's nucleotide sequence