Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05683

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05682 and H281DRAFT_05683 are separated by 155 nucleotidesH281DRAFT_05683 and H281DRAFT_05684 are separated by 70 nucleotides H281DRAFT_05682: H281DRAFT_05682 - Sugar phosphate permease, at 97,819 to 99,102 _05682 H281DRAFT_05683: H281DRAFT_05683 - Nitroreductase, at 99,258 to 99,851 _05683 H281DRAFT_05684: H281DRAFT_05684 - Predicted arabinose efflux permease, MFS family, at 99,922 to 101,397 _05684 Position (kb) 99 100Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 98.323 kb on + strand, within H281DRAFT_05682at 98.431 kb on + strand, within H281DRAFT_05682at 98.432 kb on - strand, within H281DRAFT_05682at 98.621 kb on - strand, within H281DRAFT_05682at 98.743 kb on + strand, within H281DRAFT_05682at 98.743 kb on + strand, within H281DRAFT_05682at 98.746 kb on + strand, within H281DRAFT_05682at 98.746 kb on + strand, within H281DRAFT_05682at 98.747 kb on - strand, within H281DRAFT_05682at 98.747 kb on - strand, within H281DRAFT_05682at 98.747 kb on - strand, within H281DRAFT_05682at 98.773 kb on + strand, within H281DRAFT_05682at 98.773 kb on + strand, within H281DRAFT_05682at 98.774 kb on - strand, within H281DRAFT_05682at 98.774 kb on - strand, within H281DRAFT_05682at 98.774 kb on - strand, within H281DRAFT_05682at 98.774 kb on - strand, within H281DRAFT_05682at 98.830 kb on + strand, within H281DRAFT_05682at 98.994 kb on + strandat 98.995 kb on - strandat 98.998 kb on + strandat 98.998 kb on + strandat 98.998 kb on + strandat 98.999 kb on - strandat 98.999 kb on - strandat 99.061 kb on - strandat 99.061 kb on - strandat 99.110 kb on - strandat 99.149 kb on - strandat 99.160 kb on - strandat 99.204 kb on + strandat 99.204 kb on + strandat 99.204 kb on + strandat 99.204 kb on + strandat 99.204 kb on + strandat 99.204 kb on + strandat 99.204 kb on + strandat 99.204 kb on + strandat 99.204 kb on + strandat 99.205 kb on - strandat 99.205 kb on - strandat 99.205 kb on - strandat 99.205 kb on - strandat 99.205 kb on - strandat 99.205 kb on - strandat 99.205 kb on - strandat 99.205 kb on - strandat 99.205 kb on - strandat 99.205 kb on - strandat 99.205 kb on - strandat 99.331 kb on - strand, within H281DRAFT_05683at 99.402 kb on + strand, within H281DRAFT_05683at 99.402 kb on + strand, within H281DRAFT_05683at 99.403 kb on - strand, within H281DRAFT_05683at 99.403 kb on - strand, within H281DRAFT_05683at 99.404 kb on + strand, within H281DRAFT_05683at 99.582 kb on + strand, within H281DRAFT_05683at 99.582 kb on + strand, within H281DRAFT_05683at 99.878 kb on - strandat 99.924 kb on - strandat 100.049 kb on + strandat 100.142 kb on + strand, within H281DRAFT_05684at 100.142 kb on + strand, within H281DRAFT_05684at 100.142 kb on + strand, within H281DRAFT_05684at 100.143 kb on - strand, within H281DRAFT_05684at 100.143 kb on - strand, within H281DRAFT_05684at 100.202 kb on + strand, within H281DRAFT_05684at 100.202 kb on + strand, within H281DRAFT_05684at 100.203 kb on - strand, within H281DRAFT_05684at 100.295 kb on + strand, within H281DRAFT_05684at 100.326 kb on + strand, within H281DRAFT_05684at 100.326 kb on + strand, within H281DRAFT_05684at 100.326 kb on + strand, within H281DRAFT_05684at 100.326 kb on + strand, within H281DRAFT_05684at 100.327 kb on - strand, within H281DRAFT_05684at 100.331 kb on + strand, within H281DRAFT_05684at 100.331 kb on + strand, within H281DRAFT_05684at 100.332 kb on - strand, within H281DRAFT_05684at 100.332 kb on - strand, within H281DRAFT_05684at 100.332 kb on - strand, within H281DRAFT_05684at 100.427 kb on + strand, within H281DRAFT_05684at 100.427 kb on + strand, within H281DRAFT_05684at 100.427 kb on + strand, within H281DRAFT_05684at 100.457 kb on + strand, within H281DRAFT_05684at 100.458 kb on - strand, within H281DRAFT_05684at 100.481 kb on + strand, within H281DRAFT_05684at 100.481 kb on + strandat 100.481 kb on + strand, within H281DRAFT_05684at 100.482 kb on - strand, within H281DRAFT_05684at 100.482 kb on - strand, within H281DRAFT_05684at 100.482 kb on - strand, within H281DRAFT_05684at 100.503 kb on - strand, within H281DRAFT_05684at 100.752 kb on + strand, within H281DRAFT_05684at 100.753 kb on - strand, within H281DRAFT_05684at 100.753 kb on - strand, within H281DRAFT_05684at 100.753 kb on - strand, within H281DRAFT_05684at 100.753 kb on - strand, within H281DRAFT_05684at 100.850 kb on - strand, within H281DRAFT_05684

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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98,323 + H281DRAFT_05682 0.39 -0.1
98,431 + H281DRAFT_05682 0.48 +0.3
98,432 - H281DRAFT_05682 0.48 +1.2
98,621 - H281DRAFT_05682 0.62 +1.4
98,743 + H281DRAFT_05682 0.72 +0.1
98,743 + H281DRAFT_05682 0.72 +0.3
98,746 + H281DRAFT_05682 0.72 -1.8
98,746 + H281DRAFT_05682 0.72 +0.5
98,747 - H281DRAFT_05682 0.72 +0.1
98,747 - H281DRAFT_05682 0.72 -2.9
98,747 - H281DRAFT_05682 0.72 +0.0
98,773 + H281DRAFT_05682 0.74 +0.2
98,773 + H281DRAFT_05682 0.74 +0.7
98,774 - H281DRAFT_05682 0.74 -0.6
98,774 - H281DRAFT_05682 0.74 +0.3
98,774 - H281DRAFT_05682 0.74 +0.3
98,774 - H281DRAFT_05682 0.74 -0.5
98,830 + H281DRAFT_05682 0.79 -0.0
98,994 + +0.2
98,995 - +0.5
98,998 + +0.6
98,998 + +0.2
98,998 + +0.9
98,999 - -0.6
98,999 - +0.3
99,061 - +1.5
99,061 - -0.1
99,110 - -0.5
99,149 - -0.5
99,160 - +0.2
99,204 + -0.5
99,204 + -0.6
99,204 + -0.3
99,204 + -1.2
99,204 + -0.0
99,204 + -0.1
99,204 + -0.0
99,204 + -1.4
99,204 + -1.0
99,205 - -0.1
99,205 - +0.5
99,205 - +0.7
99,205 - +0.1
99,205 - +0.6
99,205 - +0.1
99,205 - -0.9
99,205 - +0.6
99,205 - -0.3
99,205 - -0.2
99,205 - -0.7
99,331 - H281DRAFT_05683 0.12 +0.2
99,402 + H281DRAFT_05683 0.24 +0.3
99,402 + H281DRAFT_05683 0.24 +0.3
99,403 - H281DRAFT_05683 0.24 +0.3
99,403 - H281DRAFT_05683 0.24 +0.1
99,404 + H281DRAFT_05683 0.25 +0.1
99,582 + H281DRAFT_05683 0.55 -0.2
99,582 + H281DRAFT_05683 0.55 +0.2
99,878 - +0.1
99,924 - +0.1
100,049 + -2.3
100,142 + H281DRAFT_05684 0.15 +0.1
100,142 + H281DRAFT_05684 0.15 +0.1
100,142 + H281DRAFT_05684 0.15 +0.7
100,143 - H281DRAFT_05684 0.15 +0.0
100,143 - H281DRAFT_05684 0.15 -0.5
100,202 + H281DRAFT_05684 0.19 +0.2
100,202 + H281DRAFT_05684 0.19 -0.2
100,203 - H281DRAFT_05684 0.19 +1.5
100,295 + H281DRAFT_05684 0.25 +0.4
100,326 + H281DRAFT_05684 0.27 -0.2
100,326 + H281DRAFT_05684 0.27 +2.2
100,326 + H281DRAFT_05684 0.27 +1.1
100,326 + H281DRAFT_05684 0.27 -1.6
100,327 - H281DRAFT_05684 0.27 +0.0
100,331 + H281DRAFT_05684 0.28 +0.1
100,331 + H281DRAFT_05684 0.28 +0.3
100,332 - H281DRAFT_05684 0.28 +0.9
100,332 - H281DRAFT_05684 0.28 +0.2
100,332 - H281DRAFT_05684 0.28 -0.7
100,427 + H281DRAFT_05684 0.34 +2.1
100,427 + H281DRAFT_05684 0.34 -0.0
100,427 + H281DRAFT_05684 0.34 +0.3
100,457 + H281DRAFT_05684 0.36 +0.1
100,458 - H281DRAFT_05684 0.36 -0.0
100,481 + H281DRAFT_05684 0.38 +0.1
100,481 + -0.5
100,481 + H281DRAFT_05684 0.38 -0.7
100,482 - H281DRAFT_05684 0.38 -0.7
100,482 - H281DRAFT_05684 0.38 -0.2
100,482 - H281DRAFT_05684 0.38 -0.5
100,503 - H281DRAFT_05684 0.39 -0.1
100,752 + H281DRAFT_05684 0.56 +0.3
100,753 - H281DRAFT_05684 0.56 -0.8
100,753 - H281DRAFT_05684 0.56 -1.4
100,753 - H281DRAFT_05684 0.56 -0.4
100,753 - H281DRAFT_05684 0.56 -1.1
100,850 - H281DRAFT_05684 0.63 +1.1

Or see this region's nucleotide sequence