Experiment: 2'-Deoxyinosine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05476 and H281DRAFT_05477 are separated by 3 nucleotides H281DRAFT_05477 and H281DRAFT_05478 are separated by 216 nucleotides H281DRAFT_05478 and H281DRAFT_05479 are separated by 360 nucleotides
H281DRAFT_05476: H281DRAFT_05476 - Short-chain dehydrogenase, at 57,488 to 58,498
_05476
H281DRAFT_05477: H281DRAFT_05477 - Glucoamylase (glucan-1,4-alpha-glucosidase), GH15 family, at 58,502 to 60,277
_05477
H281DRAFT_05478: H281DRAFT_05478 - hypothetical protein, at 60,494 to 60,793
_05478
H281DRAFT_05479: H281DRAFT_05479 - hypothetical protein, at 61,154 to 61,339
_05479
Position (kb)
58
59
60
61 Strain fitness (log2 ratio)
-1
0
1
2
3 at 57.839 kb on + strand, within H281DRAFT_05476 at 58.225 kb on - strand, within H281DRAFT_05476 at 58.282 kb on + strand, within H281DRAFT_05476 at 58.523 kb on + strand at 58.579 kb on - strand at 58.814 kb on - strand, within H281DRAFT_05477 at 58.941 kb on + strand, within H281DRAFT_05477 at 58.941 kb on + strand, within H281DRAFT_05477 at 59.414 kb on + strand, within H281DRAFT_05477 at 59.414 kb on + strand, within H281DRAFT_05477 at 59.415 kb on - strand, within H281DRAFT_05477 at 59.694 kb on - strand, within H281DRAFT_05477 at 59.694 kb on - strand, within H281DRAFT_05477 at 59.868 kb on - strand, within H281DRAFT_05477 at 59.995 kb on - strand, within H281DRAFT_05477 at 59.995 kb on - strand, within H281DRAFT_05477 at 60.162 kb on - strand at 60.162 kb on - strand at 60.162 kb on - strand at 60.229 kb on + strand at 60.650 kb on + strand, within H281DRAFT_05478 at 60.650 kb on + strand, within H281DRAFT_05478 at 60.651 kb on - strand, within H281DRAFT_05478 at 60.671 kb on + strand, within H281DRAFT_05478 at 60.792 kb on - strand at 60.822 kb on + strand at 60.822 kb on + strand at 60.822 kb on + strand at 60.866 kb on - strand at 60.866 kb on - strand at 60.965 kb on - strand at 60.965 kb on - strand at 60.975 kb on - strand at 60.977 kb on - strand at 61.043 kb on + strand at 61.043 kb on + strand at 61.044 kb on - strand at 61.059 kb on + strand at 61.060 kb on - strand at 61.275 kb on + strand, within H281DRAFT_05479
Per-strain Table
Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C) remove 57,839 + H281DRAFT_05476 0.35 +0.2 58,225 - H281DRAFT_05476 0.73 -1.2 58,282 + H281DRAFT_05476 0.79 -1.5 58,523 + -0.1 58,579 - +0.1 58,814 - H281DRAFT_05477 0.18 -0.1 58,941 + H281DRAFT_05477 0.25 -0.0 58,941 + H281DRAFT_05477 0.25 +0.8 59,414 + H281DRAFT_05477 0.51 -0.4 59,414 + H281DRAFT_05477 0.51 -0.1 59,415 - H281DRAFT_05477 0.51 +1.0 59,694 - H281DRAFT_05477 0.67 +0.2 59,694 - H281DRAFT_05477 0.67 +0.6 59,868 - H281DRAFT_05477 0.77 -0.2 59,995 - H281DRAFT_05477 0.84 -0.0 59,995 - H281DRAFT_05477 0.84 +1.4 60,162 - -0.3 60,162 - -0.1 60,162 - +0.7 60,229 + +0.4 60,650 + H281DRAFT_05478 0.52 -0.2 60,650 + H281DRAFT_05478 0.52 +0.1 60,651 - H281DRAFT_05478 0.52 -1.1 60,671 + H281DRAFT_05478 0.59 +0.1 60,792 - -0.6 60,822 + +1.0 60,822 + +1.1 60,822 + -0.2 60,866 - +1.4 60,866 - -0.2 60,965 - +0.1 60,965 - -0.7 60,975 - +0.3 60,977 - -0.1 61,043 + +0.0 61,043 + +3.6 61,044 - -0.0 61,059 + +0.7 61,060 - -0.1 61,275 + H281DRAFT_05479 0.65 -0.1
Or see this region's nucleotide sequence