Experiment: 2'-Deoxyinosine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05362 and H281DRAFT_05363 are separated by 36 nucleotides H281DRAFT_05363 and H281DRAFT_05364 are separated by 14 nucleotides
H281DRAFT_05362: H281DRAFT_05362 - Tetratricopeptide repeat-containing protein, at 115,643 to 116,329
_05362
H281DRAFT_05363: H281DRAFT_05363 - type VI secretion system protein ImpB, at 116,366 to 116,914
_05363
H281DRAFT_05364: H281DRAFT_05364 - type VI secretion system protein ImpC, at 116,929 to 118,419
_05364
Position (kb)
116
117 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 115.366 kb on - strand at 115.392 kb on - strand at 115.403 kb on + strand at 115.403 kb on + strand at 115.403 kb on + strand at 115.404 kb on - strand at 115.404 kb on - strand at 115.404 kb on - strand at 115.509 kb on - strand at 115.565 kb on + strand at 115.566 kb on - strand at 115.566 kb on - strand at 115.568 kb on + strand at 115.568 kb on + strand at 115.570 kb on + strand at 115.659 kb on + strand at 115.660 kb on - strand at 115.660 kb on - strand at 115.662 kb on + strand at 115.663 kb on - strand at 115.669 kb on - strand at 115.669 kb on - strand at 115.677 kb on + strand at 115.678 kb on - strand at 115.751 kb on - strand, within H281DRAFT_05362 at 115.751 kb on - strand, within H281DRAFT_05362 at 115.754 kb on - strand, within H281DRAFT_05362 at 115.774 kb on + strand, within H281DRAFT_05362 at 115.774 kb on + strand, within H281DRAFT_05362 at 115.775 kb on - strand, within H281DRAFT_05362 at 115.775 kb on - strand, within H281DRAFT_05362 at 115.779 kb on + strand, within H281DRAFT_05362 at 115.779 kb on + strand, within H281DRAFT_05362 at 115.817 kb on + strand, within H281DRAFT_05362 at 115.818 kb on - strand, within H281DRAFT_05362 at 115.818 kb on - strand at 115.898 kb on + strand, within H281DRAFT_05362 at 115.898 kb on + strand, within H281DRAFT_05362 at 115.899 kb on - strand, within H281DRAFT_05362 at 115.969 kb on - strand, within H281DRAFT_05362 at 115.969 kb on - strand, within H281DRAFT_05362 at 116.184 kb on + strand, within H281DRAFT_05362 at 116.185 kb on - strand, within H281DRAFT_05362 at 116.385 kb on + strand at 116.385 kb on + strand at 116.385 kb on + strand at 116.386 kb on - strand at 116.432 kb on + strand, within H281DRAFT_05363 at 116.432 kb on + strand, within H281DRAFT_05363 at 116.432 kb on + strand, within H281DRAFT_05363 at 116.433 kb on - strand, within H281DRAFT_05363 at 116.433 kb on - strand, within H281DRAFT_05363 at 116.433 kb on - strand, within H281DRAFT_05363 at 116.433 kb on - strand, within H281DRAFT_05363 at 116.433 kb on - strand, within H281DRAFT_05363 at 116.433 kb on - strand, within H281DRAFT_05363 at 116.433 kb on - strand, within H281DRAFT_05363 at 116.433 kb on - strand, within H281DRAFT_05363 at 116.433 kb on - strand, within H281DRAFT_05363 at 116.912 kb on + strand at 116.912 kb on + strand at 116.913 kb on - strand at 116.916 kb on + strand at 116.917 kb on - strand at 116.917 kb on - strand at 116.917 kb on - strand at 117.236 kb on - strand, within H281DRAFT_05364 at 117.236 kb on - strand, within H281DRAFT_05364 at 117.364 kb on + strand, within H281DRAFT_05364 at 117.365 kb on - strand, within H281DRAFT_05364 at 117.365 kb on - strand, within H281DRAFT_05364 at 117.451 kb on + strand, within H281DRAFT_05364 at 117.452 kb on - strand, within H281DRAFT_05364 at 117.452 kb on - strand, within H281DRAFT_05364 at 117.637 kb on + strand, within H281DRAFT_05364 at 117.638 kb on - strand, within H281DRAFT_05364 at 117.747 kb on + strand, within H281DRAFT_05364 at 117.747 kb on + strand, within H281DRAFT_05364 at 117.754 kb on + strand, within H281DRAFT_05364 at 117.754 kb on + strand, within H281DRAFT_05364 at 117.754 kb on + strand, within H281DRAFT_05364 at 117.754 kb on + strand, within H281DRAFT_05364
Per-strain Table
Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C) remove 115,366 - +0.1 115,392 - -0.9 115,403 + -0.3 115,403 + +0.4 115,403 + -0.0 115,404 - -0.2 115,404 - -0.1 115,404 - +0.1 115,509 - -0.6 115,565 + +0.3 115,566 - -0.4 115,566 - -0.5 115,568 + -0.8 115,568 + +0.2 115,570 + -0.3 115,659 + +0.7 115,660 - -1.2 115,660 - -0.4 115,662 + +0.3 115,663 - -0.5 115,669 - -0.6 115,669 - -2.0 115,677 + +0.3 115,678 - +0.0 115,751 - H281DRAFT_05362 0.16 -0.3 115,751 - H281DRAFT_05362 0.16 -0.1 115,754 - H281DRAFT_05362 0.16 +0.5 115,774 + H281DRAFT_05362 0.19 -0.1 115,774 + H281DRAFT_05362 0.19 -0.9 115,775 - H281DRAFT_05362 0.19 +0.9 115,775 - H281DRAFT_05362 0.19 -0.6 115,779 + H281DRAFT_05362 0.20 +0.7 115,779 + H281DRAFT_05362 0.20 +0.5 115,817 + H281DRAFT_05362 0.25 -0.2 115,818 - H281DRAFT_05362 0.25 -0.1 115,818 - +0.7 115,898 + H281DRAFT_05362 0.37 -0.4 115,898 + H281DRAFT_05362 0.37 -0.3 115,899 - H281DRAFT_05362 0.37 -1.0 115,969 - H281DRAFT_05362 0.47 +0.2 115,969 - H281DRAFT_05362 0.47 +0.0 116,184 + H281DRAFT_05362 0.79 -0.9 116,185 - H281DRAFT_05362 0.79 -0.6 116,385 + +0.4 116,385 + -0.2 116,385 + -0.6 116,386 - +0.1 116,432 + H281DRAFT_05363 0.12 -0.4 116,432 + H281DRAFT_05363 0.12 -0.5 116,432 + H281DRAFT_05363 0.12 -0.3 116,433 - H281DRAFT_05363 0.12 -0.4 116,433 - H281DRAFT_05363 0.12 -0.8 116,433 - H281DRAFT_05363 0.12 -0.2 116,433 - H281DRAFT_05363 0.12 +1.1 116,433 - H281DRAFT_05363 0.12 +0.4 116,433 - H281DRAFT_05363 0.12 +0.0 116,433 - H281DRAFT_05363 0.12 +0.1 116,433 - H281DRAFT_05363 0.12 -0.3 116,433 - H281DRAFT_05363 0.12 +0.1 116,912 + -0.8 116,912 + -0.2 116,913 - +0.3 116,916 + -0.1 116,917 - +0.5 116,917 - -0.7 116,917 - -0.5 117,236 - H281DRAFT_05364 0.21 -0.1 117,236 - H281DRAFT_05364 0.21 +0.7 117,364 + H281DRAFT_05364 0.29 +0.4 117,365 - H281DRAFT_05364 0.29 +0.0 117,365 - H281DRAFT_05364 0.29 +0.3 117,451 + H281DRAFT_05364 0.35 +0.1 117,452 - H281DRAFT_05364 0.35 -0.8 117,452 - H281DRAFT_05364 0.35 +0.5 117,637 + H281DRAFT_05364 0.47 -0.1 117,638 - H281DRAFT_05364 0.48 +0.1 117,747 + H281DRAFT_05364 0.55 +0.2 117,747 + H281DRAFT_05364 0.55 -0.7 117,754 + H281DRAFT_05364 0.55 +0.5 117,754 + H281DRAFT_05364 0.55 -0.3 117,754 + H281DRAFT_05364 0.55 +3.3 117,754 + H281DRAFT_05364 0.55 +0.2
Or see this region's nucleotide sequence