Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05342

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05341 and H281DRAFT_05342 are separated by 351 nucleotidesH281DRAFT_05342 and H281DRAFT_05343 are separated by 74 nucleotides H281DRAFT_05341: H281DRAFT_05341 - hypothetical protein, at 92,257 to 93,306 _05341 H281DRAFT_05342: H281DRAFT_05342 - drug resistance transporter, EmrB/QacA subfamily, at 93,658 to 95,241 _05342 H281DRAFT_05343: H281DRAFT_05343 - transcriptional regulator, TetR family, at 95,316 to 96,119 _05343 Position (kb) 93 94 95 96Strain fitness (log2 ratio) -1 0 1 2at 92.771 kb on + strand, within H281DRAFT_05341at 93.309 kb on + strandat 93.310 kb on - strandat 93.370 kb on + strandat 93.397 kb on - strandat 93.738 kb on - strandat 93.738 kb on - strandat 93.770 kb on - strandat 93.770 kb on - strandat 94.631 kb on + strand, within H281DRAFT_05342at 94.632 kb on - strand, within H281DRAFT_05342at 94.973 kb on + strand, within H281DRAFT_05342at 95.294 kb on + strandat 95.294 kb on + strandat 95.340 kb on - strandat 95.637 kb on + strand, within H281DRAFT_05343at 96.098 kb on + strandat 96.099 kb on - strandat 96.129 kb on + strandat 96.130 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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92,771 + H281DRAFT_05341 0.49 -0.2
93,309 + -0.1
93,310 - -1.3
93,370 + +0.1
93,397 - -1.7
93,738 - +0.7
93,738 - -0.1
93,770 - +1.2
93,770 - +0.9
94,631 + H281DRAFT_05342 0.61 +0.6
94,632 - H281DRAFT_05342 0.61 +0.2
94,973 + H281DRAFT_05342 0.83 +1.3
95,294 + +0.1
95,294 + +2.2
95,340 - -1.7
95,637 + H281DRAFT_05343 0.40 +1.4
96,098 + +0.5
96,099 - +0.5
96,129 + +1.4
96,130 - -0.3

Or see this region's nucleotide sequence