Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05165

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05164 and H281DRAFT_05165 are separated by 69 nucleotidesH281DRAFT_05165 and H281DRAFT_05166 are separated by 249 nucleotides H281DRAFT_05164: H281DRAFT_05164 - Cytosine/adenosine deaminase, at 117,791 to 119,188 _05164 H281DRAFT_05165: H281DRAFT_05165 - transcriptional regulator, LysR family, at 119,258 to 120,190 _05165 H281DRAFT_05166: H281DRAFT_05166 - nucleoside ABC transporter ATP-binding protein, at 120,440 to 122,041 _05166 Position (kb) 119 120 121Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 118.362 kb on + strand, within H281DRAFT_05164at 118.362 kb on + strand, within H281DRAFT_05164at 118.363 kb on - strand, within H281DRAFT_05164at 118.394 kb on + strand, within H281DRAFT_05164at 118.395 kb on - strand, within H281DRAFT_05164at 118.554 kb on - strand, within H281DRAFT_05164at 118.555 kb on + strand, within H281DRAFT_05164at 118.556 kb on - strand, within H281DRAFT_05164at 118.715 kb on - strand, within H281DRAFT_05164at 118.845 kb on + strand, within H281DRAFT_05164at 119.071 kb on + strandat 119.172 kb on - strandat 119.245 kb on - strandat 119.245 kb on - strandat 119.355 kb on + strand, within H281DRAFT_05165at 119.356 kb on - strand, within H281DRAFT_05165at 119.419 kb on - strand, within H281DRAFT_05165at 119.422 kb on - strand, within H281DRAFT_05165at 119.494 kb on - strand, within H281DRAFT_05165at 119.575 kb on - strand, within H281DRAFT_05165at 119.621 kb on - strand, within H281DRAFT_05165at 120.164 kb on - strandat 120.205 kb on - strandat 120.205 kb on - strandat 120.207 kb on - strandat 120.348 kb on - strandat 120.348 kb on - strandat 120.351 kb on + strandat 120.351 kb on + strandat 120.352 kb on - strandat 120.456 kb on - strandat 120.540 kb on - strandat 121.070 kb on + strand, within H281DRAFT_05166

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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118,362 + H281DRAFT_05164 0.41 +0.5
118,362 + H281DRAFT_05164 0.41 +1.1
118,363 - H281DRAFT_05164 0.41 -0.0
118,394 + H281DRAFT_05164 0.43 +0.3
118,395 - H281DRAFT_05164 0.43 +0.2
118,554 - H281DRAFT_05164 0.55 +0.1
118,555 + H281DRAFT_05164 0.55 +0.9
118,556 - H281DRAFT_05164 0.55 +0.8
118,715 - H281DRAFT_05164 0.66 -0.4
118,845 + H281DRAFT_05164 0.75 +0.6
119,071 + +1.2
119,172 - -1.4
119,245 - +0.8
119,245 - -0.7
119,355 + H281DRAFT_05165 0.10 -4.1
119,356 - H281DRAFT_05165 0.11 -0.9
119,419 - H281DRAFT_05165 0.17 -1.2
119,422 - H281DRAFT_05165 0.18 -1.0
119,494 - H281DRAFT_05165 0.25 -2.2
119,575 - H281DRAFT_05165 0.34 -0.3
119,621 - H281DRAFT_05165 0.39 -0.4
120,164 - -0.2
120,205 - -0.7
120,205 - -0.5
120,207 - -0.8
120,348 - -0.9
120,348 - -0.7
120,351 + +2.3
120,351 + +3.3
120,352 - -0.2
120,456 - -0.4
120,540 - +0.5
121,070 + H281DRAFT_05166 0.39 +1.2

Or see this region's nucleotide sequence