Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04922

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04921 and H281DRAFT_04922 are separated by 128 nucleotidesH281DRAFT_04922 and H281DRAFT_04923 overlap by 4 nucleotides H281DRAFT_04921: H281DRAFT_04921 - iron complex outermembrane recepter protein, at 82,600 to 84,762 _04921 H281DRAFT_04922: H281DRAFT_04922 - iron complex transport system permease protein, at 84,891 to 86,882 _04922 H281DRAFT_04923: H281DRAFT_04923 - iron complex transport system substrate-binding protein, at 86,879 to 87,841 _04923 Position (kb) 84 85 86 87Strain fitness (log2 ratio) -1 0 1 2at 83.913 kb on + strand, within H281DRAFT_04921at 84.392 kb on - strand, within H281DRAFT_04921at 84.398 kb on - strand, within H281DRAFT_04921at 84.400 kb on - strand, within H281DRAFT_04921at 84.679 kb on + strandat 85.315 kb on + strand, within H281DRAFT_04922at 86.281 kb on - strand, within H281DRAFT_04922at 86.619 kb on + strand, within H281DRAFT_04922at 86.791 kb on + strandat 87.230 kb on + strand, within H281DRAFT_04923at 87.231 kb on - strand, within H281DRAFT_04923at 87.234 kb on - strand, within H281DRAFT_04923at 87.238 kb on - strand, within H281DRAFT_04923

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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83,913 + H281DRAFT_04921 0.61 +0.5
84,392 - H281DRAFT_04921 0.83 +0.3
84,398 - H281DRAFT_04921 0.83 +1.1
84,400 - H281DRAFT_04921 0.83 -0.0
84,679 + -0.7
85,315 + H281DRAFT_04922 0.21 +0.3
86,281 - H281DRAFT_04922 0.70 +1.8
86,619 + H281DRAFT_04922 0.87 +0.4
86,791 + +0.5
87,230 + H281DRAFT_04923 0.36 +0.7
87,231 - H281DRAFT_04923 0.37 +1.0
87,234 - H281DRAFT_04923 0.37 +0.5
87,238 - H281DRAFT_04923 0.37 +0.7

Or see this region's nucleotide sequence