Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04809

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04808 and H281DRAFT_04809 are separated by 177 nucleotidesH281DRAFT_04809 and H281DRAFT_04810 are separated by 17 nucleotides H281DRAFT_04808: H281DRAFT_04808 - chaperonin GroEL, at 242,702 to 244,342 _04808 H281DRAFT_04809: H281DRAFT_04809 - adenylylsulfate kinase, at 244,520 to 245,134 _04809 H281DRAFT_04810: H281DRAFT_04810 - Sulfotransferase family protein, at 245,152 to 246,363 _04810 Position (kb) 244 245 246Strain fitness (log2 ratio) -2 -1 0 1 2 3at 244.340 kb on + strandat 244.340 kb on + strandat 244.340 kb on + strandat 244.340 kb on + strandat 244.340 kb on + strandat 244.340 kb on + strandat 244.340 kb on + strandat 244.341 kb on - strandat 244.341 kb on - strandat 244.516 kb on - strandat 244.521 kb on + strandat 244.521 kb on + strandat 244.565 kb on - strandat 244.571 kb on + strandat 244.689 kb on + strand, within H281DRAFT_04809at 244.689 kb on + strand, within H281DRAFT_04809at 244.740 kb on + strand, within H281DRAFT_04809at 244.740 kb on + strand, within H281DRAFT_04809at 244.740 kb on + strand, within H281DRAFT_04809at 244.740 kb on + strand, within H281DRAFT_04809at 244.740 kb on + strand, within H281DRAFT_04809at 244.741 kb on - strand, within H281DRAFT_04809at 244.741 kb on - strand, within H281DRAFT_04809at 244.741 kb on - strand, within H281DRAFT_04809at 244.741 kb on - strand, within H281DRAFT_04809at 244.741 kb on - strand, within H281DRAFT_04809at 244.741 kb on - strand, within H281DRAFT_04809at 244.741 kb on - strand, within H281DRAFT_04809at 244.741 kb on - strand, within H281DRAFT_04809at 244.742 kb on + strand, within H281DRAFT_04809at 244.742 kb on + strand, within H281DRAFT_04809at 244.742 kb on + strand, within H281DRAFT_04809at 244.742 kb on + strand, within H281DRAFT_04809at 244.743 kb on - strand, within H281DRAFT_04809at 244.743 kb on - strand, within H281DRAFT_04809at 244.743 kb on - strand, within H281DRAFT_04809at 244.743 kb on - strandat 244.743 kb on - strand, within H281DRAFT_04809at 244.819 kb on + strand, within H281DRAFT_04809at 244.819 kb on + strand, within H281DRAFT_04809at 244.820 kb on - strand, within H281DRAFT_04809at 244.820 kb on - strand, within H281DRAFT_04809at 244.820 kb on - strand, within H281DRAFT_04809at 244.822 kb on + strand, within H281DRAFT_04809at 244.823 kb on - strand, within H281DRAFT_04809at 244.828 kb on + strand, within H281DRAFT_04809at 244.828 kb on + strand, within H281DRAFT_04809at 244.829 kb on - strand, within H281DRAFT_04809at 244.829 kb on - strand, within H281DRAFT_04809at 244.829 kb on - strand, within H281DRAFT_04809at 244.829 kb on - strand, within H281DRAFT_04809at 244.829 kb on - strand, within H281DRAFT_04809at 244.953 kb on + strand, within H281DRAFT_04809at 244.954 kb on - strand, within H281DRAFT_04809at 244.954 kb on - strand, within H281DRAFT_04809at 244.954 kb on - strand, within H281DRAFT_04809at 244.954 kb on - strand, within H281DRAFT_04809at 244.954 kb on - strand, within H281DRAFT_04809at 245.086 kb on + strandat 245.273 kb on + strandat 245.274 kb on - strand, within H281DRAFT_04810at 245.274 kb on - strand, within H281DRAFT_04810at 245.447 kb on + strand, within H281DRAFT_04810at 245.447 kb on + strand, within H281DRAFT_04810at 245.447 kb on + strand, within H281DRAFT_04810at 245.448 kb on - strand, within H281DRAFT_04810at 245.448 kb on - strand, within H281DRAFT_04810at 245.451 kb on + strand, within H281DRAFT_04810at 245.452 kb on - strand, within H281DRAFT_04810at 245.452 kb on - strand, within H281DRAFT_04810at 245.492 kb on + strand, within H281DRAFT_04810at 245.493 kb on - strand, within H281DRAFT_04810at 245.493 kb on - strand, within H281DRAFT_04810at 245.536 kb on + strand, within H281DRAFT_04810at 245.536 kb on + strand, within H281DRAFT_04810at 245.537 kb on - strand, within H281DRAFT_04810at 245.570 kb on - strand, within H281DRAFT_04810at 245.589 kb on - strand, within H281DRAFT_04810at 245.607 kb on + strand, within H281DRAFT_04810at 245.607 kb on + strand, within H281DRAFT_04810at 245.715 kb on - strand, within H281DRAFT_04810at 245.737 kb on - strand, within H281DRAFT_04810at 245.793 kb on + strand, within H281DRAFT_04810at 246.099 kb on - strand, within H281DRAFT_04810at 246.104 kb on + strand, within H281DRAFT_04810at 246.112 kb on + strand, within H281DRAFT_04810at 246.112 kb on + strand, within H281DRAFT_04810at 246.113 kb on - strand, within H281DRAFT_04810

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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244,340 + +0.6
244,340 + -0.8
244,340 + +3.1
244,340 + -0.4
244,340 + +0.7
244,340 + +1.3
244,340 + -0.5
244,341 - -0.6
244,341 - +0.9
244,516 - +0.5
244,521 + +0.3
244,521 + -0.2
244,565 - +0.9
244,571 + +0.4
244,689 + H281DRAFT_04809 0.27 +0.3
244,689 + H281DRAFT_04809 0.27 -0.5
244,740 + H281DRAFT_04809 0.36 -0.1
244,740 + H281DRAFT_04809 0.36 +0.0
244,740 + H281DRAFT_04809 0.36 +1.3
244,740 + H281DRAFT_04809 0.36 -0.2
244,740 + H281DRAFT_04809 0.36 -0.1
244,741 - H281DRAFT_04809 0.36 +1.0
244,741 - H281DRAFT_04809 0.36 -1.2
244,741 - H281DRAFT_04809 0.36 -0.2
244,741 - H281DRAFT_04809 0.36 -0.1
244,741 - H281DRAFT_04809 0.36 +0.2
244,741 - H281DRAFT_04809 0.36 +0.7
244,741 - H281DRAFT_04809 0.36 +0.3
244,741 - H281DRAFT_04809 0.36 -0.5
244,742 + H281DRAFT_04809 0.36 -0.2
244,742 + H281DRAFT_04809 0.36 +1.0
244,742 + H281DRAFT_04809 0.36 +0.3
244,742 + H281DRAFT_04809 0.36 -0.4
244,743 - H281DRAFT_04809 0.36 -0.2
244,743 - H281DRAFT_04809 0.36 -0.1
244,743 - H281DRAFT_04809 0.36 +0.3
244,743 - -1.0
244,743 - H281DRAFT_04809 0.36 -0.0
244,819 + H281DRAFT_04809 0.49 +0.5
244,819 + H281DRAFT_04809 0.49 +0.1
244,820 - H281DRAFT_04809 0.49 +0.5
244,820 - H281DRAFT_04809 0.49 +0.0
244,820 - H281DRAFT_04809 0.49 +1.4
244,822 + H281DRAFT_04809 0.49 +0.3
244,823 - H281DRAFT_04809 0.49 -0.5
244,828 + H281DRAFT_04809 0.50 +0.4
244,828 + H281DRAFT_04809 0.50 +0.0
244,829 - H281DRAFT_04809 0.50 +1.6
244,829 - H281DRAFT_04809 0.50 -0.6
244,829 - H281DRAFT_04809 0.50 -0.6
244,829 - H281DRAFT_04809 0.50 +0.4
244,829 - H281DRAFT_04809 0.50 +0.5
244,953 + H281DRAFT_04809 0.70 +0.2
244,954 - H281DRAFT_04809 0.71 -0.5
244,954 - H281DRAFT_04809 0.71 +0.4
244,954 - H281DRAFT_04809 0.71 -0.1
244,954 - H281DRAFT_04809 0.71 -0.4
244,954 - H281DRAFT_04809 0.71 -0.1
245,086 + +0.4
245,273 + +0.6
245,274 - H281DRAFT_04810 0.10 -0.6
245,274 - H281DRAFT_04810 0.10 -2.0
245,447 + H281DRAFT_04810 0.24 +0.3
245,447 + H281DRAFT_04810 0.24 +0.6
245,447 + H281DRAFT_04810 0.24 +0.5
245,448 - H281DRAFT_04810 0.24 -0.5
245,448 - H281DRAFT_04810 0.24 -0.5
245,451 + H281DRAFT_04810 0.25 +2.0
245,452 - H281DRAFT_04810 0.25 -0.6
245,452 - H281DRAFT_04810 0.25 -0.2
245,492 + H281DRAFT_04810 0.28 +0.3
245,493 - H281DRAFT_04810 0.28 -0.0
245,493 - H281DRAFT_04810 0.28 -0.5
245,536 + H281DRAFT_04810 0.32 -0.1
245,536 + H281DRAFT_04810 0.32 +0.4
245,537 - H281DRAFT_04810 0.32 -0.2
245,570 - H281DRAFT_04810 0.34 -0.4
245,589 - H281DRAFT_04810 0.36 -0.9
245,607 + H281DRAFT_04810 0.38 -0.2
245,607 + H281DRAFT_04810 0.38 +0.8
245,715 - H281DRAFT_04810 0.46 -0.5
245,737 - H281DRAFT_04810 0.48 -0.1
245,793 + H281DRAFT_04810 0.53 -1.8
246,099 - H281DRAFT_04810 0.78 +0.3
246,104 + H281DRAFT_04810 0.79 +1.0
246,112 + H281DRAFT_04810 0.79 +0.5
246,112 + H281DRAFT_04810 0.79 -0.2
246,113 - H281DRAFT_04810 0.79 +0.7

Or see this region's nucleotide sequence