Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04667

Experiment: 2'-Deoxyinosine 5 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_04666 and H281DRAFT_04667 are separated by 137 nucleotidesH281DRAFT_04667 and H281DRAFT_04668 are separated by 18 nucleotides H281DRAFT_04666: H281DRAFT_04666 - MFS transporter, MHS family, proline/betaine transporter, at 67,436 to 68,713 _04666 H281DRAFT_04667: H281DRAFT_04667 - protein translocase subunit secF, at 68,851 to 69,801 _04667 H281DRAFT_04668: H281DRAFT_04668 - preprotein translocase subunit SecD, at 69,820 to 71,880 _04668 Position (kb) 68 69 70Strain fitness (log2 ratio) -1 0 1at 67.936 kb on + strand, within H281DRAFT_04666at 68.057 kb on + strand, within H281DRAFT_04666at 68.058 kb on - strand, within H281DRAFT_04666at 68.380 kb on - strand, within H281DRAFT_04666at 68.402 kb on + strand, within H281DRAFT_04666at 68.402 kb on + strand, within H281DRAFT_04666at 68.403 kb on - strand, within H281DRAFT_04666at 68.474 kb on + strand, within H281DRAFT_04666at 68.549 kb on + strand, within H281DRAFT_04666at 68.549 kb on + strand, within H281DRAFT_04666at 68.550 kb on - strand, within H281DRAFT_04666at 68.550 kb on - strand, within H281DRAFT_04666at 68.550 kb on - strand, within H281DRAFT_04666at 68.639 kb on + strandat 68.639 kb on + strandat 68.642 kb on + strandat 68.643 kb on - strandat 68.643 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
remove
67,936 + H281DRAFT_04666 0.39 +1.3
68,057 + H281DRAFT_04666 0.49 -0.2
68,058 - H281DRAFT_04666 0.49 +0.5
68,380 - H281DRAFT_04666 0.74 +0.8
68,402 + H281DRAFT_04666 0.76 +0.5
68,402 + H281DRAFT_04666 0.76 +0.3
68,403 - H281DRAFT_04666 0.76 +0.7
68,474 + H281DRAFT_04666 0.81 +0.1
68,549 + H281DRAFT_04666 0.87 +0.0
68,549 + H281DRAFT_04666 0.87 +0.2
68,550 - H281DRAFT_04666 0.87 -0.4
68,550 - H281DRAFT_04666 0.87 -0.4
68,550 - H281DRAFT_04666 0.87 +0.7
68,639 + +0.1
68,639 + -0.2
68,642 + +1.0
68,643 - -1.5
68,643 - -0.4

Or see this region's nucleotide sequence