Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04606

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04606 and H281DRAFT_04607 are separated by 106 nucleotidesH281DRAFT_04607 and H281DRAFT_04608 are separated by 37 nucleotidesH281DRAFT_04608 and H281DRAFT_04609 are separated by 38 nucleotides H281DRAFT_04606: H281DRAFT_04606 - threonine ammonia-lyase, biosynthetic, long form, at 3 to 782 _04606 H281DRAFT_04607: H281DRAFT_04607 - hypothetical protein, at 889 to 1,260 _04607 H281DRAFT_04608: H281DRAFT_04608 - hypothetical protein, at 1,298 to 1,474 _04608 H281DRAFT_04609: H281DRAFT_04609 - hypothetical protein, at 1,513 to 1,731 _04609 Position (kb) 0 1Strain fitness (log2 ratio) -1 0 1 2at 0.206 kb on - strand, within H281DRAFT_04606at 0.736 kb on + strandat 0.766 kb on + strandat 0.766 kb on + strandat 0.898 kb on - strandat 1.025 kb on + strand, within H281DRAFT_04607at 1.026 kb on - strand, within H281DRAFT_04607at 1.164 kb on + strand, within H281DRAFT_04607at 1.699 kb on - strand, within H281DRAFT_04609

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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206 - H281DRAFT_04606 0.26 -0.7
736 + -0.3
766 + +0.9
766 + -1.0
898 - -0.5
1,025 + H281DRAFT_04607 0.37 +0.1
1,026 - H281DRAFT_04607 0.37 +2.1
1,164 + H281DRAFT_04607 0.74 +0.8
1,699 - H281DRAFT_04609 0.85 +0.4

Or see this region's nucleotide sequence