Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04596

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04595 and H281DRAFT_04596 are separated by 122 nucleotidesH281DRAFT_04596 and H281DRAFT_04597 are separated by 121 nucleotides H281DRAFT_04595: H281DRAFT_04595 - 3-hydroxyacyl-CoA dehydrogenase, at 326,615 to 328,180 _04595 H281DRAFT_04596: H281DRAFT_04596 - glutathione S-transferase, at 328,303 to 328,950 _04596 H281DRAFT_04597: H281DRAFT_04597 - 2-keto-4-methylthiobutyrate aminotransferase apoenzyme, at 329,072 to 330,244 _04597 Position (kb) 328 329Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 327.319 kb on - strand, within H281DRAFT_04595at 327.324 kb on + strand, within H281DRAFT_04595at 327.382 kb on + strand, within H281DRAFT_04595at 327.383 kb on - strand, within H281DRAFT_04595at 327.395 kb on - strand, within H281DRAFT_04595at 327.411 kb on + strand, within H281DRAFT_04595at 327.423 kb on + strand, within H281DRAFT_04595at 327.424 kb on - strand, within H281DRAFT_04595at 327.449 kb on + strand, within H281DRAFT_04595at 327.665 kb on + strand, within H281DRAFT_04595at 327.867 kb on - strand, within H281DRAFT_04595at 327.867 kb on - strand, within H281DRAFT_04595at 328.032 kb on + strandat 328.033 kb on - strandat 328.072 kb on - strandat 328.157 kb on + strandat 328.158 kb on - strandat 328.202 kb on + strandat 328.213 kb on - strandat 328.333 kb on - strandat 328.336 kb on + strandat 328.336 kb on + strandat 328.337 kb on - strandat 328.337 kb on - strandat 328.339 kb on + strandat 328.340 kb on - strandat 328.340 kb on - strandat 328.340 kb on - strandat 328.397 kb on + strand, within H281DRAFT_04596at 328.494 kb on + strand, within H281DRAFT_04596at 328.494 kb on + strand, within H281DRAFT_04596at 328.494 kb on + strand, within H281DRAFT_04596at 328.494 kb on + strand, within H281DRAFT_04596at 328.495 kb on - strand, within H281DRAFT_04596at 328.495 kb on - strand, within H281DRAFT_04596at 328.504 kb on + strand, within H281DRAFT_04596at 328.819 kb on + strand, within H281DRAFT_04596at 328.864 kb on + strand, within H281DRAFT_04596at 328.864 kb on + strand, within H281DRAFT_04596at 328.864 kb on + strand, within H281DRAFT_04596at 328.864 kb on + strand, within H281DRAFT_04596at 328.924 kb on + strandat 328.925 kb on - strandat 329.073 kb on + strandat 329.074 kb on - strandat 329.074 kb on - strandat 329.138 kb on + strandat 329.138 kb on + strandat 329.138 kb on + strandat 329.139 kb on - strandat 329.256 kb on + strand, within H281DRAFT_04597at 329.274 kb on + strand, within H281DRAFT_04597at 329.275 kb on - strand, within H281DRAFT_04597at 329.391 kb on + strand, within H281DRAFT_04597at 329.392 kb on - strand, within H281DRAFT_04597at 329.392 kb on - strand, within H281DRAFT_04597at 329.517 kb on + strand, within H281DRAFT_04597at 329.517 kb on + strand, within H281DRAFT_04597at 329.518 kb on - strand, within H281DRAFT_04597at 329.518 kb on - strand, within H281DRAFT_04597at 329.518 kb on - strand, within H281DRAFT_04597at 329.518 kb on - strand, within H281DRAFT_04597at 329.524 kb on + strand, within H281DRAFT_04597at 329.525 kb on - strand, within H281DRAFT_04597at 329.525 kb on - strand, within H281DRAFT_04597at 329.616 kb on + strand, within H281DRAFT_04597at 329.616 kb on + strand, within H281DRAFT_04597at 329.617 kb on - strand, within H281DRAFT_04597at 329.617 kb on - strand, within H281DRAFT_04597at 329.617 kb on - strand, within H281DRAFT_04597at 329.618 kb on + strand, within H281DRAFT_04597at 329.618 kb on + strand, within H281DRAFT_04597at 329.618 kb on + strand, within H281DRAFT_04597at 329.618 kb on + strand, within H281DRAFT_04597at 329.618 kb on + strand, within H281DRAFT_04597at 329.618 kb on + strand, within H281DRAFT_04597at 329.618 kb on + strand, within H281DRAFT_04597at 329.619 kb on - strand, within H281DRAFT_04597at 329.619 kb on - strand, within H281DRAFT_04597at 329.619 kb on - strand, within H281DRAFT_04597at 329.843 kb on + strand, within H281DRAFT_04597at 329.843 kb on + strand, within H281DRAFT_04597at 329.844 kb on - strand, within H281DRAFT_04597at 329.844 kb on - strand, within H281DRAFT_04597at 329.847 kb on + strand, within H281DRAFT_04597at 329.847 kb on + strand, within H281DRAFT_04597at 329.848 kb on - strand, within H281DRAFT_04597at 329.848 kb on - strand, within H281DRAFT_04597at 329.848 kb on - strand, within H281DRAFT_04597at 329.856 kb on + strand, within H281DRAFT_04597at 329.856 kb on + strand, within H281DRAFT_04597at 329.877 kb on - strand, within H281DRAFT_04597at 329.877 kb on - strand, within H281DRAFT_04597

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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327,319 - H281DRAFT_04595 0.45 +0.0
327,324 + H281DRAFT_04595 0.45 +0.6
327,382 + H281DRAFT_04595 0.49 +0.7
327,383 - H281DRAFT_04595 0.49 +0.5
327,395 - H281DRAFT_04595 0.50 +0.1
327,411 + H281DRAFT_04595 0.51 +0.2
327,423 + H281DRAFT_04595 0.52 -0.2
327,424 - H281DRAFT_04595 0.52 +0.2
327,449 + H281DRAFT_04595 0.53 +1.1
327,665 + H281DRAFT_04595 0.67 +0.4
327,867 - H281DRAFT_04595 0.80 -0.2
327,867 - H281DRAFT_04595 0.80 -1.1
328,032 + +0.3
328,033 - -0.3
328,072 - +0.1
328,157 + +0.8
328,158 - +0.5
328,202 + +1.1
328,213 - -2.4
328,333 - -0.5
328,336 + +0.2
328,336 + -0.6
328,337 - -1.6
328,337 - -0.8
328,339 + -0.2
328,340 - -2.3
328,340 - -2.4
328,340 - -5.3
328,397 + H281DRAFT_04596 0.15 -0.6
328,494 + H281DRAFT_04596 0.29 -0.0
328,494 + H281DRAFT_04596 0.29 -0.3
328,494 + H281DRAFT_04596 0.29 -0.1
328,494 + H281DRAFT_04596 0.29 -0.1
328,495 - H281DRAFT_04596 0.30 -2.7
328,495 - H281DRAFT_04596 0.30 -2.3
328,504 + H281DRAFT_04596 0.31 +0.2
328,819 + H281DRAFT_04596 0.80 +0.5
328,864 + H281DRAFT_04596 0.87 -0.4
328,864 + H281DRAFT_04596 0.87 -1.4
328,864 + H281DRAFT_04596 0.87 +1.9
328,864 + H281DRAFT_04596 0.87 -0.3
328,924 + +0.4
328,925 - -0.4
329,073 + -1.1
329,074 - -0.0
329,074 - +0.2
329,138 + -0.5
329,138 + +0.3
329,138 + -0.2
329,139 - +0.0
329,256 + H281DRAFT_04597 0.16 -0.2
329,274 + H281DRAFT_04597 0.17 +0.4
329,275 - H281DRAFT_04597 0.17 +0.1
329,391 + H281DRAFT_04597 0.27 -0.0
329,392 - H281DRAFT_04597 0.27 +0.6
329,392 - H281DRAFT_04597 0.27 -0.1
329,517 + H281DRAFT_04597 0.38 -0.1
329,517 + H281DRAFT_04597 0.38 +0.5
329,518 - H281DRAFT_04597 0.38 +0.1
329,518 - H281DRAFT_04597 0.38 +0.1
329,518 - H281DRAFT_04597 0.38 -0.2
329,518 - H281DRAFT_04597 0.38 -0.8
329,524 + H281DRAFT_04597 0.39 +0.5
329,525 - H281DRAFT_04597 0.39 -0.1
329,525 - H281DRAFT_04597 0.39 +0.7
329,616 + H281DRAFT_04597 0.46 +0.6
329,616 + H281DRAFT_04597 0.46 -0.9
329,617 - H281DRAFT_04597 0.46 -1.2
329,617 - H281DRAFT_04597 0.46 -0.6
329,617 - H281DRAFT_04597 0.46 +0.0
329,618 + H281DRAFT_04597 0.47 +0.9
329,618 + H281DRAFT_04597 0.47 +0.1
329,618 + H281DRAFT_04597 0.47 -0.2
329,618 + H281DRAFT_04597 0.47 +0.2
329,618 + H281DRAFT_04597 0.47 -0.2
329,618 + H281DRAFT_04597 0.47 -0.4
329,618 + H281DRAFT_04597 0.47 +0.2
329,619 - H281DRAFT_04597 0.47 -0.4
329,619 - H281DRAFT_04597 0.47 -0.0
329,619 - H281DRAFT_04597 0.47 -1.2
329,843 + H281DRAFT_04597 0.66 +0.4
329,843 + H281DRAFT_04597 0.66 +0.7
329,844 - H281DRAFT_04597 0.66 +0.2
329,844 - H281DRAFT_04597 0.66 -0.0
329,847 + H281DRAFT_04597 0.66 -0.3
329,847 + H281DRAFT_04597 0.66 -0.1
329,848 - H281DRAFT_04597 0.66 +0.0
329,848 - H281DRAFT_04597 0.66 -0.8
329,848 - H281DRAFT_04597 0.66 +1.3
329,856 + H281DRAFT_04597 0.67 +0.4
329,856 + H281DRAFT_04597 0.67 -0.0
329,877 - H281DRAFT_04597 0.69 -0.9
329,877 - H281DRAFT_04597 0.69 +0.3

Or see this region's nucleotide sequence