Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04594

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04592 and H281DRAFT_04593 are separated by 20 nucleotidesH281DRAFT_04593 and H281DRAFT_04594 are separated by 10 nucleotidesH281DRAFT_04594 and H281DRAFT_04595 overlap by 4 nucleotides H281DRAFT_04592: H281DRAFT_04592 - Predicted kinase, aminoglycoside phosphotransferase (APT) family, at 323,940 to 325,046 _04592 H281DRAFT_04593: H281DRAFT_04593 - probable phosphoglycerate mutase, at 325,067 to 325,819 _04593 H281DRAFT_04594: H281DRAFT_04594 - putative oxepin-CoA hydrolase (EC 3.3.2.12) (from data), at 325,830 to 326,618 _04594 H281DRAFT_04595: H281DRAFT_04595 - 3-hydroxyacyl-CoA dehydrogenase, at 326,615 to 328,180 _04595 Position (kb) 325 326 327Strain fitness (log2 ratio) -1 0 1 2at 325.000 kb on + strandat 325.001 kb on - strandat 325.072 kb on + strandat 325.073 kb on - strandat 325.080 kb on + strandat 325.080 kb on + strandat 325.117 kb on + strandat 325.156 kb on - strand, within H281DRAFT_04593at 325.459 kb on + strand, within H281DRAFT_04593at 325.482 kb on - strand, within H281DRAFT_04593at 325.482 kb on - strand, within H281DRAFT_04593at 325.482 kb on - strand, within H281DRAFT_04593at 325.719 kb on + strand, within H281DRAFT_04593at 325.719 kb on + strand, within H281DRAFT_04593at 325.719 kb on + strand, within H281DRAFT_04593at 325.743 kb on - strand, within H281DRAFT_04593at 325.762 kb on + strandat 325.766 kb on + strandat 325.773 kb on + strandat 325.773 kb on + strandat 325.773 kb on + strandat 325.774 kb on - strandat 325.835 kb on + strandat 325.837 kb on + strandat 325.913 kb on + strand, within H281DRAFT_04594at 326.001 kb on + strand, within H281DRAFT_04594at 326.515 kb on + strand, within H281DRAFT_04594at 326.516 kb on - strand, within H281DRAFT_04594at 326.516 kb on - strand, within H281DRAFT_04594at 326.565 kb on + strandat 326.746 kb on + strandat 326.902 kb on + strand, within H281DRAFT_04595at 327.032 kb on - strand, within H281DRAFT_04595at 327.225 kb on + strand, within H281DRAFT_04595at 327.226 kb on - strand, within H281DRAFT_04595at 327.319 kb on - strand, within H281DRAFT_04595at 327.324 kb on + strand, within H281DRAFT_04595at 327.382 kb on + strand, within H281DRAFT_04595at 327.383 kb on - strand, within H281DRAFT_04595at 327.395 kb on - strand, within H281DRAFT_04595at 327.411 kb on + strand, within H281DRAFT_04595at 327.423 kb on + strand, within H281DRAFT_04595at 327.424 kb on - strand, within H281DRAFT_04595at 327.449 kb on + strand, within H281DRAFT_04595

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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325,000 + +0.0
325,001 - +0.0
325,072 + +0.7
325,073 - -0.4
325,080 + -0.8
325,080 + -0.2
325,117 + -0.0
325,156 - H281DRAFT_04593 0.12 +0.5
325,459 + H281DRAFT_04593 0.52 +0.3
325,482 - H281DRAFT_04593 0.55 +0.1
325,482 - H281DRAFT_04593 0.55 +0.1
325,482 - H281DRAFT_04593 0.55 +0.2
325,719 + H281DRAFT_04593 0.87 +0.1
325,719 + H281DRAFT_04593 0.87 -0.2
325,719 + H281DRAFT_04593 0.87 +0.0
325,743 - H281DRAFT_04593 0.90 +0.9
325,762 + +1.3
325,766 + +0.2
325,773 + +0.4
325,773 + +0.0
325,773 + +0.7
325,774 - -0.6
325,835 + +1.1
325,837 + +0.2
325,913 + H281DRAFT_04594 0.11 +2.4
326,001 + H281DRAFT_04594 0.22 +0.7
326,515 + H281DRAFT_04594 0.87 +0.9
326,516 - H281DRAFT_04594 0.87 -0.1
326,516 - H281DRAFT_04594 0.87 +0.1
326,565 + +1.5
326,746 + -0.3
326,902 + H281DRAFT_04595 0.18 +0.6
327,032 - H281DRAFT_04595 0.27 -0.0
327,225 + H281DRAFT_04595 0.39 +0.9
327,226 - H281DRAFT_04595 0.39 +0.0
327,319 - H281DRAFT_04595 0.45 +0.0
327,324 + H281DRAFT_04595 0.45 +0.6
327,382 + H281DRAFT_04595 0.49 +0.7
327,383 - H281DRAFT_04595 0.49 +0.5
327,395 - H281DRAFT_04595 0.50 +0.1
327,411 + H281DRAFT_04595 0.51 +0.2
327,423 + H281DRAFT_04595 0.52 -0.2
327,424 - H281DRAFT_04595 0.52 +0.2
327,449 + H281DRAFT_04595 0.53 +1.1

Or see this region's nucleotide sequence