Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04476

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04475 and H281DRAFT_04476 are separated by 11 nucleotidesH281DRAFT_04476 and H281DRAFT_04477 are separated by 155 nucleotides H281DRAFT_04475: H281DRAFT_04475 - Uncharacterized membrane protein YccC, at 204,823 to 207,033 _04475 H281DRAFT_04476: H281DRAFT_04476 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 207,045 to 208,709 _04476 H281DRAFT_04477: H281DRAFT_04477 - transcriptional regulator, LysR family, at 208,865 to 209,803 _04477 Position (kb) 207 208 209Strain fitness (log2 ratio) -2 -1 0 1at 206.063 kb on + strand, within H281DRAFT_04475at 206.064 kb on - strand, within H281DRAFT_04475at 206.064 kb on - strand, within H281DRAFT_04475at 206.064 kb on - strand, within H281DRAFT_04475at 206.157 kb on - strand, within H281DRAFT_04475at 206.157 kb on - strand, within H281DRAFT_04475at 206.429 kb on + strand, within H281DRAFT_04475at 206.429 kb on + strand, within H281DRAFT_04475at 206.429 kb on + strand, within H281DRAFT_04475at 206.430 kb on - strand, within H281DRAFT_04475at 206.933 kb on + strandat 206.933 kb on + strandat 206.933 kb on + strandat 206.933 kb on + strandat 206.933 kb on - strandat 206.934 kb on - strandat 207.440 kb on - strand, within H281DRAFT_04476at 207.662 kb on + strand, within H281DRAFT_04476at 208.021 kb on - strand, within H281DRAFT_04476at 208.021 kb on - strand, within H281DRAFT_04476at 208.123 kb on + strand, within H281DRAFT_04476at 208.124 kb on - strand, within H281DRAFT_04476at 208.144 kb on + strand, within H281DRAFT_04476at 208.267 kb on + strand, within H281DRAFT_04476at 208.267 kb on + strand, within H281DRAFT_04476at 208.268 kb on - strand, within H281DRAFT_04476at 208.331 kb on - strand, within H281DRAFT_04476at 208.331 kb on - strand, within H281DRAFT_04476at 208.331 kb on - strand, within H281DRAFT_04476at 208.331 kb on - strand, within H281DRAFT_04476at 208.333 kb on + strand, within H281DRAFT_04476at 208.333 kb on + strand, within H281DRAFT_04476at 208.334 kb on - strand, within H281DRAFT_04476at 208.602 kb on - strandat 208.654 kb on - strandat 208.665 kb on - strandat 208.731 kb on + strandat 208.731 kb on + strandat 208.731 kb on + strandat 208.732 kb on - strandat 208.732 kb on - strandat 208.732 kb on - strandat 208.864 kb on + strandat 208.864 kb on + strandat 208.871 kb on - strandat 208.890 kb on + strandat 208.890 kb on + strandat 208.890 kb on + strandat 208.891 kb on - strandat 208.945 kb on + strandat 208.946 kb on - strandat 208.946 kb on - strandat 208.958 kb on + strandat 208.958 kb on + strandat 209.058 kb on - strand, within H281DRAFT_04477at 209.058 kb on - strand, within H281DRAFT_04477at 209.088 kb on - strand, within H281DRAFT_04477at 209.088 kb on - strand, within H281DRAFT_04477at 209.088 kb on - strand, within H281DRAFT_04477at 209.088 kb on - strand, within H281DRAFT_04477at 209.180 kb on + strand, within H281DRAFT_04477at 209.180 kb on + strand, within H281DRAFT_04477at 209.181 kb on - strand, within H281DRAFT_04477at 209.181 kb on - strand, within H281DRAFT_04477at 209.359 kb on + strand, within H281DRAFT_04477at 209.359 kb on + strand, within H281DRAFT_04477at 209.359 kb on + strand, within H281DRAFT_04477at 209.360 kb on - strand, within H281DRAFT_04477at 209.360 kb on - strand, within H281DRAFT_04477at 209.378 kb on + strand, within H281DRAFT_04477at 209.379 kb on - strand, within H281DRAFT_04477at 209.652 kb on - strand, within H281DRAFT_04477at 209.676 kb on - strand, within H281DRAFT_04477at 209.684 kb on + strand, within H281DRAFT_04477at 209.699 kb on + strand, within H281DRAFT_04477

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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206,063 + H281DRAFT_04475 0.56 -0.4
206,064 - H281DRAFT_04475 0.56 +0.2
206,064 - H281DRAFT_04475 0.56 -0.1
206,064 - H281DRAFT_04475 0.56 -0.1
206,157 - H281DRAFT_04475 0.60 +0.2
206,157 - H281DRAFT_04475 0.60 -0.3
206,429 + H281DRAFT_04475 0.73 +0.1
206,429 + H281DRAFT_04475 0.73 +0.5
206,429 + H281DRAFT_04475 0.73 +1.0
206,430 - H281DRAFT_04475 0.73 +0.7
206,933 + +1.7
206,933 + -2.3
206,933 + -0.7
206,933 + +0.0
206,933 - +0.5
206,934 - +0.7
207,440 - H281DRAFT_04476 0.24 +0.6
207,662 + H281DRAFT_04476 0.37 -0.1
208,021 - H281DRAFT_04476 0.59 +0.8
208,021 - H281DRAFT_04476 0.59 +0.7
208,123 + H281DRAFT_04476 0.65 -0.2
208,124 - H281DRAFT_04476 0.65 -0.4
208,144 + H281DRAFT_04476 0.66 -1.0
208,267 + H281DRAFT_04476 0.73 +0.4
208,267 + H281DRAFT_04476 0.73 +1.1
208,268 - H281DRAFT_04476 0.73 +0.5
208,331 - H281DRAFT_04476 0.77 -0.7
208,331 - H281DRAFT_04476 0.77 +0.5
208,331 - H281DRAFT_04476 0.77 -0.9
208,331 - H281DRAFT_04476 0.77 +1.1
208,333 + H281DRAFT_04476 0.77 +0.1
208,333 + H281DRAFT_04476 0.77 +0.2
208,334 - H281DRAFT_04476 0.77 +1.2
208,602 - +0.5
208,654 - +0.1
208,665 - +0.0
208,731 + -0.5
208,731 + -0.6
208,731 + +0.2
208,732 - +0.1
208,732 - +0.4
208,732 - -0.4
208,864 + +0.2
208,864 + -0.1
208,871 - -0.4
208,890 + +0.5
208,890 + +0.6
208,890 + -0.1
208,891 - +0.1
208,945 + -0.2
208,946 - -0.0
208,946 - -0.0
208,958 + +0.7
208,958 + -0.1
209,058 - H281DRAFT_04477 0.21 +0.2
209,058 - H281DRAFT_04477 0.21 +0.8
209,088 - H281DRAFT_04477 0.24 -0.1
209,088 - H281DRAFT_04477 0.24 -0.2
209,088 - H281DRAFT_04477 0.24 +0.1
209,088 - H281DRAFT_04477 0.24 +1.0
209,180 + H281DRAFT_04477 0.34 -0.0
209,180 + H281DRAFT_04477 0.34 -0.1
209,181 - H281DRAFT_04477 0.34 +0.6
209,181 - H281DRAFT_04477 0.34 +0.2
209,359 + H281DRAFT_04477 0.53 +0.3
209,359 + H281DRAFT_04477 0.53 +0.4
209,359 + H281DRAFT_04477 0.53 +1.3
209,360 - H281DRAFT_04477 0.53 +0.5
209,360 - H281DRAFT_04477 0.53 +0.5
209,378 + H281DRAFT_04477 0.55 +0.4
209,379 - H281DRAFT_04477 0.55 -0.5
209,652 - H281DRAFT_04477 0.84 +0.1
209,676 - H281DRAFT_04477 0.86 -0.1
209,684 + H281DRAFT_04477 0.87 +1.5
209,699 + H281DRAFT_04477 0.89 -0.2

Or see this region's nucleotide sequence