Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04175

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04174 and H281DRAFT_04175 are separated by 237 nucleotidesH281DRAFT_04175 and H281DRAFT_04176 are separated by 30 nucleotidesH281DRAFT_04176 and H281DRAFT_04177 are separated by 128 nucleotides H281DRAFT_04174: H281DRAFT_04174 - Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain, at 291,013 to 292,020 _04174 H281DRAFT_04175: H281DRAFT_04175 - Carbon monoxide dehydrogenase subunit G, at 292,258 to 292,992 _04175 H281DRAFT_04176: H281DRAFT_04176 - Uncharacterized conserved protein, DUF427 family, at 293,023 to 293,415 _04176 H281DRAFT_04177: H281DRAFT_04177 - hypothetical protein, at 293,544 to 294,041 _04177 Position (kb) 292 293Strain fitness (log2 ratio) -2 -1 0 1at 291.291 kb on + strand, within H281DRAFT_04174at 291.292 kb on - strand, within H281DRAFT_04174at 291.380 kb on + strand, within H281DRAFT_04174at 291.508 kb on + strand, within H281DRAFT_04174at 291.508 kb on + strand, within H281DRAFT_04174at 291.509 kb on - strand, within H281DRAFT_04174at 291.509 kb on - strand, within H281DRAFT_04174at 291.509 kb on - strand, within H281DRAFT_04174at 291.509 kb on - strand, within H281DRAFT_04174at 291.569 kb on + strand, within H281DRAFT_04174at 291.569 kb on + strand, within H281DRAFT_04174at 291.570 kb on - strand, within H281DRAFT_04174at 291.664 kb on + strand, within H281DRAFT_04174at 291.664 kb on + strand, within H281DRAFT_04174at 291.664 kb on + strand, within H281DRAFT_04174at 291.664 kb on + strand, within H281DRAFT_04174at 291.664 kb on + strand, within H281DRAFT_04174at 291.665 kb on - strand, within H281DRAFT_04174at 291.665 kb on - strand, within H281DRAFT_04174at 291.665 kb on - strand, within H281DRAFT_04174at 291.665 kb on - strand, within H281DRAFT_04174at 291.665 kb on - strand, within H281DRAFT_04174at 291.665 kb on - strand, within H281DRAFT_04174at 291.665 kb on - strand, within H281DRAFT_04174at 292.060 kb on - strandat 292.172 kb on + strandat 292.199 kb on + strandat 292.287 kb on - strandat 292.287 kb on - strandat 292.287 kb on - strandat 292.287 kb on - strandat 292.287 kb on - strandat 292.465 kb on + strand, within H281DRAFT_04175at 292.466 kb on - strand, within H281DRAFT_04175at 292.466 kb on - strand, within H281DRAFT_04175at 292.466 kb on - strand, within H281DRAFT_04175at 292.851 kb on + strand, within H281DRAFT_04175at 293.060 kb on + strandat 293.060 kb on + strandat 293.061 kb on - strandat 293.160 kb on - strand, within H281DRAFT_04176at 293.162 kb on + strand, within H281DRAFT_04176at 293.163 kb on - strand, within H281DRAFT_04176at 293.355 kb on + strand, within H281DRAFT_04176at 293.355 kb on + strand, within H281DRAFT_04176at 293.356 kb on - strand, within H281DRAFT_04176at 293.448 kb on + strandat 293.626 kb on + strand, within H281DRAFT_04177at 293.645 kb on - strand, within H281DRAFT_04177at 293.674 kb on + strand, within H281DRAFT_04177at 293.675 kb on - strand, within H281DRAFT_04177at 293.675 kb on - strand, within H281DRAFT_04177at 293.711 kb on + strand, within H281DRAFT_04177at 293.749 kb on + strand, within H281DRAFT_04177at 293.749 kb on + strand, within H281DRAFT_04177at 293.749 kb on + strand, within H281DRAFT_04177at 293.750 kb on - strand, within H281DRAFT_04177at 293.768 kb on + strand, within H281DRAFT_04177

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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291,291 + H281DRAFT_04174 0.28 +0.3
291,292 - H281DRAFT_04174 0.28 +0.3
291,380 + H281DRAFT_04174 0.36 +0.1
291,508 + H281DRAFT_04174 0.49 +0.3
291,508 + H281DRAFT_04174 0.49 +0.6
291,509 - H281DRAFT_04174 0.49 -0.1
291,509 - H281DRAFT_04174 0.49 +1.2
291,509 - H281DRAFT_04174 0.49 -0.2
291,509 - H281DRAFT_04174 0.49 +1.1
291,569 + H281DRAFT_04174 0.55 +0.4
291,569 + H281DRAFT_04174 0.55 +1.0
291,570 - H281DRAFT_04174 0.55 -0.3
291,664 + H281DRAFT_04174 0.65 +0.3
291,664 + H281DRAFT_04174 0.65 -0.5
291,664 + H281DRAFT_04174 0.65 +0.0
291,664 + H281DRAFT_04174 0.65 -0.1
291,664 + H281DRAFT_04174 0.65 -0.2
291,665 - H281DRAFT_04174 0.65 +0.7
291,665 - H281DRAFT_04174 0.65 +0.5
291,665 - H281DRAFT_04174 0.65 +0.3
291,665 - H281DRAFT_04174 0.65 -0.0
291,665 - H281DRAFT_04174 0.65 -0.1
291,665 - H281DRAFT_04174 0.65 +0.5
291,665 - H281DRAFT_04174 0.65 -0.1
292,060 - +1.0
292,172 + +1.0
292,199 + -0.4
292,287 - -0.1
292,287 - -0.5
292,287 - +1.0
292,287 - +0.1
292,287 - +0.0
292,465 + H281DRAFT_04175 0.28 +1.1
292,466 - H281DRAFT_04175 0.28 +0.2
292,466 - H281DRAFT_04175 0.28 -1.4
292,466 - H281DRAFT_04175 0.28 -0.0
292,851 + H281DRAFT_04175 0.81 -0.1
293,060 + -0.1
293,060 + +1.0
293,061 - +0.7
293,160 - H281DRAFT_04176 0.35 +0.2
293,162 + H281DRAFT_04176 0.35 +1.4
293,163 - H281DRAFT_04176 0.36 -0.6
293,355 + H281DRAFT_04176 0.84 +0.5
293,355 + H281DRAFT_04176 0.84 +0.3
293,356 - H281DRAFT_04176 0.85 +0.0
293,448 + +0.9
293,626 + H281DRAFT_04177 0.16 -1.0
293,645 - H281DRAFT_04177 0.20 +0.5
293,674 + H281DRAFT_04177 0.26 -0.4
293,675 - H281DRAFT_04177 0.26 -0.1
293,675 - H281DRAFT_04177 0.26 -0.4
293,711 + H281DRAFT_04177 0.34 -0.0
293,749 + H281DRAFT_04177 0.41 -0.3
293,749 + H281DRAFT_04177 0.41 -1.2
293,749 + H281DRAFT_04177 0.41 -1.2
293,750 - H281DRAFT_04177 0.41 -1.8
293,768 + H281DRAFT_04177 0.45 +0.2

Or see this region's nucleotide sequence