Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04085

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04084 and H281DRAFT_04085 are separated by 295 nucleotidesH281DRAFT_04085 and H281DRAFT_04086 are separated by 237 nucleotides H281DRAFT_04084: H281DRAFT_04084 - cold-shock DNA-binding protein family, at 188,790 to 188,996 _04084 H281DRAFT_04085: H281DRAFT_04085 - isocitrate dehydrogenase (NADP), at 189,292 to 190,548 _04085 H281DRAFT_04086: H281DRAFT_04086 - 23S rRNA pseudouridine2457 synthase, at 190,786 to 191,448 _04086 Position (kb) 189 190 191Strain fitness (log2 ratio) -1 0 1 2at 188.383 kb on - strandat 188.556 kb on - strandat 188.556 kb on - strandat 188.556 kb on - strandat 188.603 kb on - strandat 188.636 kb on - strandat 188.774 kb on + strandat 188.775 kb on - strandat 189.089 kb on + strandat 189.090 kb on - strandat 189.188 kb on + strandat 189.293 kb on + strandat 189.293 kb on + strandat 189.294 kb on - strandat 189.371 kb on + strandat 189.444 kb on + strand, within H281DRAFT_04085at 189.494 kb on + strand, within H281DRAFT_04085at 189.494 kb on + strand, within H281DRAFT_04085at 189.495 kb on - strand, within H281DRAFT_04085at 189.509 kb on + strand, within H281DRAFT_04085at 189.510 kb on - strand, within H281DRAFT_04085at 189.561 kb on + strand, within H281DRAFT_04085at 189.562 kb on - strand, within H281DRAFT_04085at 189.620 kb on + strand, within H281DRAFT_04085at 189.620 kb on + strand, within H281DRAFT_04085at 189.621 kb on - strand, within H281DRAFT_04085at 189.656 kb on + strand, within H281DRAFT_04085at 189.656 kb on + strand, within H281DRAFT_04085at 189.657 kb on - strand, within H281DRAFT_04085at 189.813 kb on - strand, within H281DRAFT_04085at 189.836 kb on + strand, within H281DRAFT_04085at 189.951 kb on + strand, within H281DRAFT_04085at 190.064 kb on + strand, within H281DRAFT_04085at 190.064 kb on + strand, within H281DRAFT_04085at 190.064 kb on + strand, within H281DRAFT_04085at 190.064 kb on + strand, within H281DRAFT_04085at 190.065 kb on - strand, within H281DRAFT_04085at 190.145 kb on + strand, within H281DRAFT_04085at 190.169 kb on + strand, within H281DRAFT_04085at 190.169 kb on + strand, within H281DRAFT_04085at 190.169 kb on + strand, within H281DRAFT_04085at 190.169 kb on + strand, within H281DRAFT_04085at 190.169 kb on + strand, within H281DRAFT_04085at 190.169 kb on + strand, within H281DRAFT_04085at 190.169 kb on + strand, within H281DRAFT_04085at 190.170 kb on - strand, within H281DRAFT_04085at 190.170 kb on - strand, within H281DRAFT_04085at 190.259 kb on + strand, within H281DRAFT_04085at 190.259 kb on + strand, within H281DRAFT_04085at 190.259 kb on + strand, within H281DRAFT_04085at 190.259 kb on + strand, within H281DRAFT_04085at 190.259 kb on + strand, within H281DRAFT_04085at 190.260 kb on - strand, within H281DRAFT_04085at 190.260 kb on - strand, within H281DRAFT_04085at 190.337 kb on + strand, within H281DRAFT_04085at 190.373 kb on + strand, within H281DRAFT_04085at 190.374 kb on - strand, within H281DRAFT_04085at 190.419 kb on + strand, within H281DRAFT_04085at 190.541 kb on + strandat 190.542 kb on - strandat 190.653 kb on - strandat 190.747 kb on + strandat 190.747 kb on + strandat 190.747 kb on + strandat 190.747 kb on + strandat 190.751 kb on + strandat 190.778 kb on + strandat 190.779 kb on - strandat 190.786 kb on - strandat 190.786 kb on - strandat 190.803 kb on + strandat 190.804 kb on - strandat 190.804 kb on - strandat 190.878 kb on + strand, within H281DRAFT_04086at 190.878 kb on + strand, within H281DRAFT_04086at 191.073 kb on + strand, within H281DRAFT_04086at 191.073 kb on + strand, within H281DRAFT_04086at 191.073 kb on + strand, within H281DRAFT_04086at 191.074 kb on - strand, within H281DRAFT_04086at 191.164 kb on + strand, within H281DRAFT_04086at 191.164 kb on + strand, within H281DRAFT_04086at 191.165 kb on - strand, within H281DRAFT_04086at 191.191 kb on + strand, within H281DRAFT_04086at 191.209 kb on - strand, within H281DRAFT_04086at 191.454 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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188,383 - -0.0
188,556 - +0.1
188,556 - +0.6
188,556 - +0.4
188,603 - -0.0
188,636 - -0.9
188,774 + -0.8
188,775 - -0.6
189,089 + -0.2
189,090 - -0.2
189,188 + -0.1
189,293 + +0.2
189,293 + +0.5
189,294 - +0.8
189,371 + +0.7
189,444 + H281DRAFT_04085 0.12 +0.3
189,494 + H281DRAFT_04085 0.16 +0.2
189,494 + H281DRAFT_04085 0.16 -0.0
189,495 - H281DRAFT_04085 0.16 -1.0
189,509 + H281DRAFT_04085 0.17 +0.5
189,510 - H281DRAFT_04085 0.17 +0.4
189,561 + H281DRAFT_04085 0.21 +0.7
189,562 - H281DRAFT_04085 0.21 -0.2
189,620 + H281DRAFT_04085 0.26 +0.4
189,620 + H281DRAFT_04085 0.26 +0.0
189,621 - H281DRAFT_04085 0.26 -0.6
189,656 + H281DRAFT_04085 0.29 +0.1
189,656 + H281DRAFT_04085 0.29 -1.1
189,657 - H281DRAFT_04085 0.29 +0.7
189,813 - H281DRAFT_04085 0.41 +0.2
189,836 + H281DRAFT_04085 0.43 +0.2
189,951 + H281DRAFT_04085 0.52 +1.2
190,064 + H281DRAFT_04085 0.61 -0.6
190,064 + H281DRAFT_04085 0.61 +0.1
190,064 + H281DRAFT_04085 0.61 +1.0
190,064 + H281DRAFT_04085 0.61 +0.2
190,065 - H281DRAFT_04085 0.61 -0.1
190,145 + H281DRAFT_04085 0.68 -0.4
190,169 + H281DRAFT_04085 0.70 +0.3
190,169 + H281DRAFT_04085 0.70 -0.5
190,169 + H281DRAFT_04085 0.70 -0.6
190,169 + H281DRAFT_04085 0.70 -0.3
190,169 + H281DRAFT_04085 0.70 +0.1
190,169 + H281DRAFT_04085 0.70 -0.0
190,169 + H281DRAFT_04085 0.70 +0.7
190,170 - H281DRAFT_04085 0.70 +0.7
190,170 - H281DRAFT_04085 0.70 -0.6
190,259 + H281DRAFT_04085 0.77 -0.8
190,259 + H281DRAFT_04085 0.77 -0.8
190,259 + H281DRAFT_04085 0.77 +0.3
190,259 + H281DRAFT_04085 0.77 +0.1
190,259 + H281DRAFT_04085 0.77 -0.2
190,260 - H281DRAFT_04085 0.77 -0.8
190,260 - H281DRAFT_04085 0.77 +0.7
190,337 + H281DRAFT_04085 0.83 -0.4
190,373 + H281DRAFT_04085 0.86 -0.0
190,374 - H281DRAFT_04085 0.86 +0.2
190,419 + H281DRAFT_04085 0.90 -0.3
190,541 + +0.5
190,542 - +0.1
190,653 - +0.1
190,747 + +1.6
190,747 + +0.6
190,747 + -0.2
190,747 + +0.2
190,751 + +0.4
190,778 + +0.2
190,779 - -0.0
190,786 - +1.6
190,786 - -0.6
190,803 + +0.3
190,804 - +0.5
190,804 - -0.0
190,878 + H281DRAFT_04086 0.14 +0.4
190,878 + H281DRAFT_04086 0.14 -0.5
191,073 + H281DRAFT_04086 0.43 +0.7
191,073 + H281DRAFT_04086 0.43 +1.1
191,073 + H281DRAFT_04086 0.43 -0.3
191,074 - H281DRAFT_04086 0.43 -0.3
191,164 + H281DRAFT_04086 0.57 +0.3
191,164 + H281DRAFT_04086 0.57 +0.1
191,165 - H281DRAFT_04086 0.57 +1.8
191,191 + H281DRAFT_04086 0.61 -0.4
191,209 - H281DRAFT_04086 0.64 +0.3
191,454 + -0.3

Or see this region's nucleotide sequence