Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04021

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04019 and H281DRAFT_04020 are separated by 11 nucleotidesH281DRAFT_04020 and H281DRAFT_04021 are separated by 254 nucleotidesH281DRAFT_04021 and H281DRAFT_04022 are separated by 56 nucleotidesH281DRAFT_04022 and H281DRAFT_04023 overlap by 4 nucleotides H281DRAFT_04019: H281DRAFT_04019 - diaminohydroxyphosphoribosylaminopyrimidine deaminase, at 121,150 to 122,307 _04019 H281DRAFT_04020: H281DRAFT_04020 - riboflavin synthase alpha chain, at 122,319 to 122,933 _04020 H281DRAFT_04021: H281DRAFT_04021 - 3,4-dihydroxy-2-butanone 4-phosphate synthase /GTP cyclohydrolase II, at 123,188 to 124,318 _04021 H281DRAFT_04022: H281DRAFT_04022 - 6,7-dimethyl-8-ribityllumazine synthase, at 124,375 to 124,878 _04022 H281DRAFT_04023: H281DRAFT_04023 - NusB antitermination factor, at 124,875 to 125,312 _04023 Position (kb) 123 124 125Strain fitness (log2 ratio) -2 -1 0 1at 122.312 kb on + strandat 123.075 kb on - strandat 123.075 kb on - strandat 123.075 kb on - strandat 123.115 kb on + strandat 123.115 kb on + strandat 123.116 kb on - strandat 123.155 kb on + strandat 123.205 kb on + strandat 123.205 kb on + strandat 123.205 kb on + strandat 123.428 kb on + strand, within H281DRAFT_04021at 123.547 kb on + strand, within H281DRAFT_04021at 123.811 kb on + strand, within H281DRAFT_04021at 123.863 kb on + strand, within H281DRAFT_04021at 123.863 kb on + strand, within H281DRAFT_04021at 123.863 kb on + strand, within H281DRAFT_04021at 125.310 kb on + strandat 125.311 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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122,312 + -0.2
123,075 - +0.4
123,075 - +0.2
123,075 - -1.0
123,115 + -0.6
123,115 + +0.2
123,116 - +1.0
123,155 + -0.1
123,205 + -0.6
123,205 + -0.5
123,205 + -0.5
123,428 + H281DRAFT_04021 0.21 -0.3
123,547 + H281DRAFT_04021 0.32 -1.0
123,811 + H281DRAFT_04021 0.55 -1.8
123,863 + H281DRAFT_04021 0.60 -2.7
123,863 + H281DRAFT_04021 0.60 -1.2
123,863 + H281DRAFT_04021 0.60 -0.4
125,310 + -0.3
125,311 - +0.6

Or see this region's nucleotide sequence