Experiment: 2'-Deoxyinosine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03916 and H281DRAFT_03917 are separated by 70 nucleotides H281DRAFT_03917 and H281DRAFT_03918 overlap by 4 nucleotides H281DRAFT_03918 and H281DRAFT_03919 are separated by 0 nucleotides H281DRAFT_03919 and H281DRAFT_03920 are separated by 101 nucleotides
H281DRAFT_03916: H281DRAFT_03916 - Lipopolysaccharide biosynthesis regulator YciM, contains six TPR domains and a predicted metal-binding C-terminal domain, at 13,099 to 14,274
_03916
H281DRAFT_03917: H281DRAFT_03917 - Uncharacterized integral membrane protein, at 14,345 to 14,638
_03917
H281DRAFT_03918: H281DRAFT_03918 - hypothetical protein, at 14,635 to 15,180
_03918
H281DRAFT_03919: H281DRAFT_03919 - integration host factor subunit beta, at 15,181 to 15,504
_03919
H281DRAFT_03920: H281DRAFT_03920 - SSU ribosomal protein S1P, at 15,606 to 17,339
_03920
Position (kb) 14
15 Strain fitness (log2 ratio) -1
0
1
2 at 14.323 kb on - strand at 14.558 kb on - strand, within H281DRAFT_03917 at 14.570 kb on - strand, within H281DRAFT_03917 at 14.643 kb on - strand at 14.643 kb on - strand at 14.643 kb on - strand at 14.725 kb on - strand, within H281DRAFT_03918 at 14.729 kb on + strand, within H281DRAFT_03918 at 14.836 kb on + strand, within H281DRAFT_03918 at 14.836 kb on + strand, within H281DRAFT_03918 at 14.836 kb on + strand, within H281DRAFT_03918 at 14.836 kb on + strand, within H281DRAFT_03918 at 14.836 kb on + strand, within H281DRAFT_03918 at 14.837 kb on - strand, within H281DRAFT_03918 at 14.977 kb on + strand, within H281DRAFT_03918 at 14.978 kb on - strand, within H281DRAFT_03918 at 15.001 kb on + strand, within H281DRAFT_03918 at 15.001 kb on + strand, within H281DRAFT_03918 at 15.169 kb on - strand at 15.182 kb on + strand at 15.183 kb on - strand at 15.608 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C) remove 14,323 - -0.2 14,558 - H281DRAFT_03917 0.72 -1.0 14,570 - H281DRAFT_03917 0.77 -0.7 14,643 - +0.1 14,643 - -1.0 14,643 - -0.4 14,725 - H281DRAFT_03918 0.16 +1.6 14,729 + H281DRAFT_03918 0.17 -0.6 14,836 + H281DRAFT_03918 0.37 +0.3 14,836 + H281DRAFT_03918 0.37 +0.2 14,836 + H281DRAFT_03918 0.37 -0.6 14,836 + H281DRAFT_03918 0.37 +0.7 14,836 + H281DRAFT_03918 0.37 +0.3 14,837 - H281DRAFT_03918 0.37 +0.9 14,977 + H281DRAFT_03918 0.63 +0.1 14,978 - H281DRAFT_03918 0.63 -0.3 15,001 + H281DRAFT_03918 0.67 -0.2 15,001 + H281DRAFT_03918 0.67 -0.1 15,169 - +0.2 15,182 + +1.8 15,183 - +0.1 15,608 - -1.6
Or see this region's nucleotide sequence