Experiment: 2'-Deoxyinosine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03707 and H281DRAFT_03708 are separated by 308 nucleotides H281DRAFT_03708 and H281DRAFT_03709 overlap by 4 nucleotides
H281DRAFT_03707: H281DRAFT_03707 - transcriptional regulator, IclR family, at 221,069 to 221,875
_03707
H281DRAFT_03708: H281DRAFT_03708 - hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4), at 222,184 to 223,170
_03708
H281DRAFT_03709: H281DRAFT_03709 - Crotonobetainyl-CoA:carnitine CoA-transferase CaiB, at 223,167 to 224,441
_03709
Position (kb) 222
223
224 Strain fitness (log2 ratio) -2
-1
0
1 at 221.516 kb on + strand, within H281DRAFT_03707 at 221.516 kb on + strand, within H281DRAFT_03707 at 221.517 kb on - strand, within H281DRAFT_03707 at 221.517 kb on - strand, within H281DRAFT_03707 at 221.520 kb on + strand, within H281DRAFT_03707 at 221.521 kb on - strand, within H281DRAFT_03707 at 221.521 kb on - strand, within H281DRAFT_03707 at 221.644 kb on - strand, within H281DRAFT_03707 at 221.644 kb on - strand, within H281DRAFT_03707 at 221.693 kb on + strand, within H281DRAFT_03707 at 221.693 kb on + strand, within H281DRAFT_03707 at 221.693 kb on + strand, within H281DRAFT_03707 at 221.694 kb on - strand, within H281DRAFT_03707 at 221.696 kb on + strand, within H281DRAFT_03707 at 221.707 kb on + strand, within H281DRAFT_03707 at 221.708 kb on - strand, within H281DRAFT_03707 at 221.718 kb on + strand, within H281DRAFT_03707 at 221.813 kb on + strand at 221.814 kb on - strand at 221.878 kb on + strand at 221.905 kb on - strand at 222.180 kb on + strand at 222.180 kb on + strand at 222.181 kb on - strand at 222.323 kb on + strand, within H281DRAFT_03708 at 222.374 kb on + strand, within H281DRAFT_03708 at 222.402 kb on + strand, within H281DRAFT_03708 at 222.851 kb on + strand, within H281DRAFT_03708 at 222.851 kb on + strand, within H281DRAFT_03708 at 223.016 kb on + strand, within H281DRAFT_03708 at 223.064 kb on - strand, within H281DRAFT_03708 at 223.248 kb on - strand at 223.566 kb on + strand, within H281DRAFT_03709 at 223.567 kb on - strand, within H281DRAFT_03709 at 223.620 kb on + strand, within H281DRAFT_03709 at 223.620 kb on + strand, within H281DRAFT_03709 at 223.620 kb on + strand, within H281DRAFT_03709 at 223.620 kb on + strand, within H281DRAFT_03709 at 223.620 kb on + strand, within H281DRAFT_03709 at 223.621 kb on - strand, within H281DRAFT_03709 at 223.621 kb on - strand, within H281DRAFT_03709 at 223.621 kb on - strand, within H281DRAFT_03709 at 223.621 kb on - strand, within H281DRAFT_03709 at 223.621 kb on - strand, within H281DRAFT_03709 at 223.621 kb on - strand, within H281DRAFT_03709 at 223.622 kb on + strand, within H281DRAFT_03709 at 223.622 kb on + strand, within H281DRAFT_03709 at 223.622 kb on + strand, within H281DRAFT_03709 at 223.870 kb on - strand, within H281DRAFT_03709 at 224.106 kb on + strand, within H281DRAFT_03709
Per-strain Table
Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C) remove 221,516 + H281DRAFT_03707 0.55 +0.1 221,516 + H281DRAFT_03707 0.55 -0.4 221,517 - H281DRAFT_03707 0.56 +1.5 221,517 - H281DRAFT_03707 0.56 -0.4 221,520 + H281DRAFT_03707 0.56 -0.6 221,521 - H281DRAFT_03707 0.56 -0.4 221,521 - H281DRAFT_03707 0.56 +0.1 221,644 - H281DRAFT_03707 0.71 -0.5 221,644 - H281DRAFT_03707 0.71 -2.1 221,693 + H281DRAFT_03707 0.77 -0.8 221,693 + H281DRAFT_03707 0.77 +0.6 221,693 + H281DRAFT_03707 0.77 -1.0 221,694 - H281DRAFT_03707 0.77 -0.7 221,696 + H281DRAFT_03707 0.78 +0.1 221,707 + H281DRAFT_03707 0.79 +0.2 221,708 - H281DRAFT_03707 0.79 -0.1 221,718 + H281DRAFT_03707 0.80 -0.8 221,813 + -0.2 221,814 - +0.3 221,878 + -0.6 221,905 - -2.6 222,180 + -0.3 222,180 + -1.0 222,181 - +0.6 222,323 + H281DRAFT_03708 0.14 -1.0 222,374 + H281DRAFT_03708 0.19 -0.7 222,402 + H281DRAFT_03708 0.22 +0.4 222,851 + H281DRAFT_03708 0.68 -0.6 222,851 + H281DRAFT_03708 0.68 -0.4 223,016 + H281DRAFT_03708 0.84 +0.8 223,064 - H281DRAFT_03708 0.89 -0.4 223,248 - +0.2 223,566 + H281DRAFT_03709 0.31 +1.1 223,567 - H281DRAFT_03709 0.31 +0.6 223,620 + H281DRAFT_03709 0.36 -1.7 223,620 + H281DRAFT_03709 0.36 -0.2 223,620 + H281DRAFT_03709 0.36 -0.0 223,620 + H281DRAFT_03709 0.36 -0.2 223,620 + H281DRAFT_03709 0.36 +0.1 223,621 - H281DRAFT_03709 0.36 -0.4 223,621 - H281DRAFT_03709 0.36 -1.6 223,621 - H281DRAFT_03709 0.36 +1.2 223,621 - H281DRAFT_03709 0.36 +0.2 223,621 - H281DRAFT_03709 0.36 +0.1 223,621 - H281DRAFT_03709 0.36 +1.0 223,622 + H281DRAFT_03709 0.36 +0.1 223,622 + H281DRAFT_03709 0.36 +0.4 223,622 + H281DRAFT_03709 0.36 +0.6 223,870 - H281DRAFT_03709 0.55 +0.0 224,106 + H281DRAFT_03709 0.74 +0.0
Or see this region's nucleotide sequence