Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03509

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03508 and H281DRAFT_03509 are separated by 131 nucleotidesH281DRAFT_03509 and H281DRAFT_03510 are separated by 33 nucleotides H281DRAFT_03508: H281DRAFT_03508 - putative spermidine/putrescine transport system ATP-binding protein, at 1,310 to 2,416 _03508 H281DRAFT_03509: H281DRAFT_03509 - transcriptional regulator, GntR family, at 2,548 to 4,095 _03509 H281DRAFT_03510: H281DRAFT_03510 - Uncharacterized protein involved in outer membrane biogenesis, at 4,129 to 7,905 _03510 Position (kb) 2 3 4 5Strain fitness (log2 ratio) -2 -1 0 1at 1.737 kb on + strand, within H281DRAFT_03508at 1.836 kb on + strand, within H281DRAFT_03508at 1.837 kb on - strand, within H281DRAFT_03508at 1.881 kb on + strand, within H281DRAFT_03508at 1.881 kb on + strand, within H281DRAFT_03508at 2.151 kb on + strand, within H281DRAFT_03508at 2.151 kb on + strand, within H281DRAFT_03508at 2.152 kb on - strand, within H281DRAFT_03508at 2.152 kb on - strand, within H281DRAFT_03508at 2.152 kb on - strand, within H281DRAFT_03508at 2.152 kb on - strand, within H281DRAFT_03508at 2.322 kb on + strandat 2.322 kb on + strandat 2.322 kb on + strandat 2.322 kb on + strandat 2.323 kb on - strandat 2.323 kb on - strandat 2.323 kb on - strandat 2.323 kb on - strandat 2.323 kb on - strandat 2.367 kb on + strandat 2.368 kb on - strandat 2.457 kb on + strandat 2.458 kb on - strandat 2.458 kb on - strandat 2.492 kb on - strandat 2.493 kb on + strandat 2.494 kb on - strandat 2.727 kb on + strand, within H281DRAFT_03509at 2.727 kb on + strand, within H281DRAFT_03509at 2.728 kb on - strand, within H281DRAFT_03509at 2.744 kb on - strand, within H281DRAFT_03509at 2.744 kb on - strand, within H281DRAFT_03509at 2.767 kb on + strand, within H281DRAFT_03509at 2.768 kb on - strand, within H281DRAFT_03509at 2.797 kb on + strand, within H281DRAFT_03509at 2.798 kb on - strand, within H281DRAFT_03509at 2.798 kb on - strand, within H281DRAFT_03509at 3.089 kb on - strand, within H281DRAFT_03509at 3.137 kb on - strand, within H281DRAFT_03509at 3.271 kb on + strand, within H281DRAFT_03509at 3.272 kb on - strand, within H281DRAFT_03509at 3.272 kb on - strand, within H281DRAFT_03509at 3.574 kb on + strand, within H281DRAFT_03509at 3.574 kb on + strand, within H281DRAFT_03509at 3.574 kb on + strand, within H281DRAFT_03509at 3.575 kb on - strand, within H281DRAFT_03509at 3.623 kb on - strandat 3.771 kb on - strand, within H281DRAFT_03509at 3.771 kb on - strand, within H281DRAFT_03509at 3.771 kb on - strand, within H281DRAFT_03509at 3.771 kb on - strand, within H281DRAFT_03509at 3.771 kb on - strand, within H281DRAFT_03509at 3.771 kb on - strand, within H281DRAFT_03509at 3.771 kb on - strand, within H281DRAFT_03509at 3.772 kb on + strand, within H281DRAFT_03509at 3.772 kb on + strand, within H281DRAFT_03509at 3.772 kb on + strand, within H281DRAFT_03509at 3.773 kb on - strand, within H281DRAFT_03509at 3.773 kb on - strand, within H281DRAFT_03509at 3.773 kb on - strand, within H281DRAFT_03509at 3.773 kb on - strand, within H281DRAFT_03509at 3.806 kb on + strand, within H281DRAFT_03509at 3.904 kb on - strand, within H281DRAFT_03509at 3.955 kb on + strandat 3.956 kb on - strandat 4.130 kb on + strandat 4.130 kb on + strandat 4.131 kb on - strandat 4.131 kb on - strandat 4.242 kb on - strandat 4.242 kb on - strandat 4.396 kb on - strandat 4.396 kb on - strandat 4.421 kb on + strandat 4.422 kb on - strandat 4.478 kb on - strandat 4.518 kb on - strand, within H281DRAFT_03510at 4.673 kb on + strand, within H281DRAFT_03510at 4.673 kb on + strand, within H281DRAFT_03510at 4.976 kb on + strand, within H281DRAFT_03510at 5.025 kb on - strandat 5.037 kb on - strand, within H281DRAFT_03510at 5.049 kb on + strand, within H281DRAFT_03510

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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1,737 + H281DRAFT_03508 0.39 +0.8
1,836 + H281DRAFT_03508 0.48 +0.5
1,837 - H281DRAFT_03508 0.48 +0.4
1,881 + H281DRAFT_03508 0.52 +0.8
1,881 + H281DRAFT_03508 0.52 +1.0
2,151 + H281DRAFT_03508 0.76 +0.9
2,151 + H281DRAFT_03508 0.76 -0.0
2,152 - H281DRAFT_03508 0.76 +0.7
2,152 - H281DRAFT_03508 0.76 +1.0
2,152 - H281DRAFT_03508 0.76 -0.6
2,152 - H281DRAFT_03508 0.76 -0.1
2,322 + -0.0
2,322 + +0.3
2,322 + -0.6
2,322 + +1.5
2,323 - +0.5
2,323 - -0.1
2,323 - -0.2
2,323 - -2.4
2,323 - +0.3
2,367 + -0.0
2,368 - -0.8
2,457 + +0.1
2,458 - -0.8
2,458 - -0.2
2,492 - -0.5
2,493 + -0.1
2,494 - -0.1
2,727 + H281DRAFT_03509 0.12 +0.8
2,727 + H281DRAFT_03509 0.12 +0.0
2,728 - H281DRAFT_03509 0.12 -0.5
2,744 - H281DRAFT_03509 0.13 +0.3
2,744 - H281DRAFT_03509 0.13 -0.4
2,767 + H281DRAFT_03509 0.14 +0.5
2,768 - H281DRAFT_03509 0.14 +0.3
2,797 + H281DRAFT_03509 0.16 -0.6
2,798 - H281DRAFT_03509 0.16 -0.1
2,798 - H281DRAFT_03509 0.16 -0.5
3,089 - H281DRAFT_03509 0.35 +0.4
3,137 - H281DRAFT_03509 0.38 +1.0
3,271 + H281DRAFT_03509 0.47 -0.2
3,272 - H281DRAFT_03509 0.47 +0.2
3,272 - H281DRAFT_03509 0.47 +0.6
3,574 + H281DRAFT_03509 0.66 -0.5
3,574 + H281DRAFT_03509 0.66 -1.2
3,574 + H281DRAFT_03509 0.66 -0.1
3,575 - H281DRAFT_03509 0.66 +0.2
3,623 - -0.1
3,771 - H281DRAFT_03509 0.79 +0.2
3,771 - H281DRAFT_03509 0.79 +0.2
3,771 - H281DRAFT_03509 0.79 -0.3
3,771 - H281DRAFT_03509 0.79 -0.7
3,771 - H281DRAFT_03509 0.79 +0.2
3,771 - H281DRAFT_03509 0.79 +0.1
3,771 - H281DRAFT_03509 0.79 -0.1
3,772 + H281DRAFT_03509 0.79 -0.3
3,772 + H281DRAFT_03509 0.79 +0.3
3,772 + H281DRAFT_03509 0.79 -0.2
3,773 - H281DRAFT_03509 0.79 +0.7
3,773 - H281DRAFT_03509 0.79 +0.1
3,773 - H281DRAFT_03509 0.79 +0.5
3,773 - H281DRAFT_03509 0.79 -0.9
3,806 + H281DRAFT_03509 0.81 +0.5
3,904 - H281DRAFT_03509 0.88 +0.8
3,955 + -0.5
3,956 - -0.4
4,130 + -0.0
4,130 + -0.7
4,131 - -0.1
4,131 - -0.4
4,242 - +0.1
4,242 - +1.0
4,396 - +0.2
4,396 - -0.0
4,421 + +0.3
4,422 - +0.2
4,478 - -0.2
4,518 - H281DRAFT_03510 0.10 +0.4
4,673 + H281DRAFT_03510 0.14 +0.1
4,673 + H281DRAFT_03510 0.14 -0.1
4,976 + H281DRAFT_03510 0.22 +1.2
5,025 - -1.1
5,037 - H281DRAFT_03510 0.24 +0.3
5,049 + H281DRAFT_03510 0.24 -0.3

Or see this region's nucleotide sequence