Experiment: 2'-Deoxyinosine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03500 and H281DRAFT_03501 overlap by 23 nucleotides H281DRAFT_03501 and H281DRAFT_03502 overlap by 11 nucleotides H281DRAFT_03502 and H281DRAFT_03503 are separated by 85 nucleotides H281DRAFT_03503 and H281DRAFT_03504 are separated by 97 nucleotides
H281DRAFT_03500: H281DRAFT_03500 - 2-aminoethylphosphonate transport system ATP-binding protein, at 584,518 to 585,618
_03500
H281DRAFT_03501: H281DRAFT_03501 - 2-aminoethylphosphonate transport system permease protein, at 585,596 to 586,543
_03501
H281DRAFT_03502: H281DRAFT_03502 - 2-aminoethylphosphonate transport system permease protein, at 586,533 to 587,396
_03502
H281DRAFT_03503: H281DRAFT_03503 - transcriptional regulator, GntR family, at 587,482 to 588,228
_03503
H281DRAFT_03504: H281DRAFT_03504 - phosphonoacetate hydrolase, at 588,326 to 589,603
_03504
Position (kb) 586
587
588 Strain fitness (log2 ratio) -1
0
1
2 at 585.607 kb on - strand at 585.770 kb on + strand, within H281DRAFT_03501 at 586.403 kb on + strand, within H281DRAFT_03501 at 586.484 kb on + strand at 586.485 kb on - strand at 586.494 kb on - strand at 586.518 kb on + strand at 586.968 kb on + strand, within H281DRAFT_03502 at 587.298 kb on + strand, within H281DRAFT_03502 at 587.454 kb on + strand at 587.577 kb on + strand, within H281DRAFT_03503 at 587.962 kb on + strand, within H281DRAFT_03503 at 587.962 kb on + strand, within H281DRAFT_03503 at 587.972 kb on - strand, within H281DRAFT_03503 at 588.306 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C) remove 585,607 - +0.2 585,770 + H281DRAFT_03501 0.18 +0.1 586,403 + H281DRAFT_03501 0.85 -0.4 586,484 + +1.4 586,485 - -0.2 586,494 - +0.8 586,518 + +2.1 586,968 + H281DRAFT_03502 0.50 +1.1 587,298 + H281DRAFT_03502 0.89 +0.8 587,454 + -0.1 587,577 + H281DRAFT_03503 0.13 -0.1 587,962 + H281DRAFT_03503 0.64 -0.8 587,962 + H281DRAFT_03503 0.64 -0.4 587,972 - H281DRAFT_03503 0.66 -0.4 588,306 - -0.4
Or see this region's nucleotide sequence