Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03404

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03403 and H281DRAFT_03404 are separated by 22 nucleotidesH281DRAFT_03404 and H281DRAFT_03405 are separated by 92 nucleotides H281DRAFT_03403: H281DRAFT_03403 - Predicted ATPase, at 472,661 to 474,166 _03403 H281DRAFT_03404: H281DRAFT_03404 - Response regulator, at 474,189 to 474,563 _03404 H281DRAFT_03405: H281DRAFT_03405 - catalase, at 474,656 to 476,119 _03405 Position (kb) 474 475Strain fitness (log2 ratio) -1 0 1at 473.260 kb on + strand, within H281DRAFT_03403at 473.262 kb on + strand, within H281DRAFT_03403at 473.389 kb on - strand, within H281DRAFT_03403at 473.389 kb on - strand, within H281DRAFT_03403at 473.461 kb on + strand, within H281DRAFT_03403at 474.636 kb on + strandat 474.873 kb on + strand, within H281DRAFT_03405at 475.036 kb on - strand, within H281DRAFT_03405at 475.036 kb on - strand, within H281DRAFT_03405at 475.555 kb on + strand, within H281DRAFT_03405at 475.556 kb on - strand, within H281DRAFT_03405at 475.556 kb on - strand, within H281DRAFT_03405at 475.556 kb on - strand, within H281DRAFT_03405at 475.556 kb on - strand, within H281DRAFT_03405

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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473,260 + H281DRAFT_03403 0.40 +1.2
473,262 + H281DRAFT_03403 0.40 +0.6
473,389 - H281DRAFT_03403 0.48 +0.6
473,389 - H281DRAFT_03403 0.48 +0.1
473,461 + H281DRAFT_03403 0.53 +0.9
474,636 + -0.1
474,873 + H281DRAFT_03405 0.15 -0.9
475,036 - H281DRAFT_03405 0.26 -0.1
475,036 - H281DRAFT_03405 0.26 -0.4
475,555 + H281DRAFT_03405 0.61 -1.2
475,556 - H281DRAFT_03405 0.61 -0.1
475,556 - H281DRAFT_03405 0.61 +0.6
475,556 - H281DRAFT_03405 0.61 +1.7
475,556 - H281DRAFT_03405 0.61 -0.0

Or see this region's nucleotide sequence