Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03299

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03298 and H281DRAFT_03299 are separated by 306 nucleotidesH281DRAFT_03299 and H281DRAFT_03300 overlap by 17 nucleotides H281DRAFT_03298: H281DRAFT_03298 - quinoprotein glucose dehydrogenase, at 356,573 to 359,212 _03298 H281DRAFT_03299: H281DRAFT_03299 - cytochrome bd-I ubiquinol oxidase subunit 2 apoprotein, at 359,519 to 360,532 _03299 H281DRAFT_03300: H281DRAFT_03300 - cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein, at 360,516 to 361,964 _03300 Position (kb) 359 360 361Strain fitness (log2 ratio) -1 0 1at 358.680 kb on - strand, within H281DRAFT_03298at 358.854 kb on - strand, within H281DRAFT_03298at 359.024 kb on + strandat 359.036 kb on + strandat 359.043 kb on + strandat 359.132 kb on + strandat 359.132 kb on + strandat 359.132 kb on + strandat 359.187 kb on - strandat 359.312 kb on - strandat 359.351 kb on - strandat 359.429 kb on - strandat 359.444 kb on - strandat 359.566 kb on - strandat 359.571 kb on + strandat 360.014 kb on - strand, within H281DRAFT_03299at 360.059 kb on - strand, within H281DRAFT_03299at 360.800 kb on - strand, within H281DRAFT_03300at 361.056 kb on - strand, within H281DRAFT_03300

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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358,680 - H281DRAFT_03298 0.80 -0.0
358,854 - H281DRAFT_03298 0.86 -1.6
359,024 + -0.6
359,036 + -0.3
359,043 + +0.2
359,132 + +0.2
359,132 + +0.1
359,132 + +0.1
359,187 - -1.7
359,312 - +0.3
359,351 - +0.1
359,429 - +1.4
359,444 - +1.2
359,566 - +0.5
359,571 + -0.3
360,014 - H281DRAFT_03299 0.49 +1.3
360,059 - H281DRAFT_03299 0.53 -0.7
360,800 - H281DRAFT_03300 0.20 -0.1
361,056 - H281DRAFT_03300 0.37 -0.3

Or see this region's nucleotide sequence