Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03227

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03226 and H281DRAFT_03227 are separated by 414 nucleotidesH281DRAFT_03227 and H281DRAFT_03228 are separated by 191 nucleotides H281DRAFT_03226: H281DRAFT_03226 - mannose-binding protein /fructose-binding protein /ribose-binding protein, at 276,858 to 277,862 _03226 H281DRAFT_03227: H281DRAFT_03227 - transcriptional regulator, LacI family, at 278,277 to 279,308 _03227 H281DRAFT_03228: H281DRAFT_03228 - carbohydrate ABC transporter ATP-binding protein, CUT1 family, at 279,500 to 280,651 _03228 Position (kb) 278 279 280Strain fitness (log2 ratio) -1 0 1at 277.655 kb on + strand, within H281DRAFT_03226at 278.183 kb on - strandat 278.635 kb on + strand, within H281DRAFT_03227at 278.652 kb on - strand, within H281DRAFT_03227at 279.537 kb on - strandat 279.537 kb on - strandat 279.753 kb on - strand, within H281DRAFT_03228at 280.071 kb on - strand, within H281DRAFT_03228

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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277,655 + H281DRAFT_03226 0.79 +0.9
278,183 - -1.0
278,635 + H281DRAFT_03227 0.35 +0.4
278,652 - H281DRAFT_03227 0.36 +1.6
279,537 - -0.6
279,537 - -0.5
279,753 - H281DRAFT_03228 0.22 -0.0
280,071 - H281DRAFT_03228 0.50 +0.1

Or see this region's nucleotide sequence