Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02958

Experiment: 2'-Deoxyinosine 5 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_02957 and H281DRAFT_02958 are separated by 301 nucleotidesH281DRAFT_02958 and H281DRAFT_02959 are separated by 44 nucleotides H281DRAFT_02957: H281DRAFT_02957 - Predicted xylanase/chitin deacetylase, at 571,007 to 571,948 _02957 H281DRAFT_02958: H281DRAFT_02958 - putative spermidine/putrescine transport system ATP-binding protein, at 572,250 to 573,305 _02958 H281DRAFT_02959: H281DRAFT_02959 - putative spermidine/putrescine transport system substrate-binding protein, at 573,350 to 574,651 _02959 Position (kb) 572 573 574Strain fitness (log2 ratio) -1 0 1at 571.731 kb on + strand, within H281DRAFT_02957at 572.250 kb on - strandat 572.311 kb on + strandat 572.377 kb on - strand, within H281DRAFT_02958at 572.536 kb on - strand, within H281DRAFT_02958at 572.661 kb on + strand, within H281DRAFT_02958

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
remove
571,731 + H281DRAFT_02957 0.77 -0.4
572,250 - +0.1
572,311 + +0.3
572,377 - H281DRAFT_02958 0.12 +0.6
572,536 - H281DRAFT_02958 0.27 -1.1
572,661 + H281DRAFT_02958 0.39 -1.5

Or see this region's nucleotide sequence