Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02693

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02692 and H281DRAFT_02693 are separated by 78 nucleotidesH281DRAFT_02693 and H281DRAFT_02694 are separated by 104 nucleotides H281DRAFT_02692: H281DRAFT_02692 - nudix-type nucleoside diphosphatase, YffH/AdpP family, at 273,583 to 274,182 _02692 H281DRAFT_02693: H281DRAFT_02693 - transcriptional regulator, DeoR family, at 274,261 to 275,016 _02693 H281DRAFT_02694: H281DRAFT_02694 - DNA binding domain-containing protein, excisionase family, at 275,121 to 276,368 _02694 Position (kb) 274 275 276Strain fitness (log2 ratio) -1 0 1at 273.319 kb on + strandat 273.320 kb on - strandat 273.788 kb on + strand, within H281DRAFT_02692at 273.887 kb on - strand, within H281DRAFT_02692at 273.887 kb on - strand, within H281DRAFT_02692at 274.278 kb on + strandat 274.690 kb on + strand, within H281DRAFT_02693at 274.691 kb on - strand, within H281DRAFT_02693at 275.335 kb on + strand, within H281DRAFT_02694at 275.335 kb on + strand, within H281DRAFT_02694at 275.795 kb on + strand, within H281DRAFT_02694at 275.795 kb on + strand, within H281DRAFT_02694at 275.840 kb on + strand, within H281DRAFT_02694at 275.932 kb on - strand, within H281DRAFT_02694

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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273,319 + +0.1
273,320 - +0.5
273,788 + H281DRAFT_02692 0.34 +0.3
273,887 - H281DRAFT_02692 0.51 -0.9
273,887 - H281DRAFT_02692 0.51 -0.8
274,278 + -0.1
274,690 + H281DRAFT_02693 0.57 +0.6
274,691 - H281DRAFT_02693 0.57 +0.8
275,335 + H281DRAFT_02694 0.17 -0.4
275,335 + H281DRAFT_02694 0.17 +0.4
275,795 + H281DRAFT_02694 0.54 -0.8
275,795 + H281DRAFT_02694 0.54 +0.2
275,840 + H281DRAFT_02694 0.58 +0.4
275,932 - H281DRAFT_02694 0.65 -0.4

Or see this region's nucleotide sequence