Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02508

Experiment: 2'-Deoxyinosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02506 and H281DRAFT_02507 are separated by 27 nucleotidesH281DRAFT_02507 and H281DRAFT_02508 are separated by 41 nucleotidesH281DRAFT_02508 and H281DRAFT_02509 are separated by 101 nucleotides H281DRAFT_02506: H281DRAFT_02506 - hypothetical protein, at 82,721 to 83,320 _02506 H281DRAFT_02507: H281DRAFT_02507 - NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family, at 83,348 to 84,115 _02507 H281DRAFT_02508: H281DRAFT_02508 - NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family, at 84,157 to 84,891 _02508 H281DRAFT_02509: H281DRAFT_02509 - DNA-binding transcriptional regulator, LysR family, at 84,993 to 85,958 _02509 Position (kb) 84 85Strain fitness (log2 ratio) -1 0 1 2 3 4at 84.003 kb on + strand, within H281DRAFT_02507at 84.641 kb on - strand, within H281DRAFT_02508at 84.681 kb on - strand, within H281DRAFT_02508at 84.928 kb on + strandat 84.928 kb on + strandat 85.078 kb on + strandat 85.302 kb on + strand, within H281DRAFT_02509at 85.421 kb on + strand, within H281DRAFT_02509at 85.422 kb on - strand, within H281DRAFT_02509

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Per-strain Table

Position Strand Gene LocusTag Fraction 2'-Deoxyinosine 5 mM (C)
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84,003 + H281DRAFT_02507 0.85 +1.9
84,641 - H281DRAFT_02508 0.66 +3.8
84,681 - H281DRAFT_02508 0.71 +0.9
84,928 + +0.4
84,928 + -0.0
85,078 + -0.4
85,302 + H281DRAFT_02509 0.32 +0.4
85,421 + H281DRAFT_02509 0.44 +0.5
85,422 - H281DRAFT_02509 0.44 +0.3

Or see this region's nucleotide sequence